Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq2454 127 1e-24 seq1968 118 5e-22 seq2189 107 9e-19 >seq2454 Length=32274 Score = 127 bits (140), Expect = 1e-24 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| || || ||||| | || |||||||||||| || | | ||||| Sbjct 2640 CGTGTGCCAAATTGTCCTAATGGCAAAAGTATATTAATATTGTTACTTCCTACATAATTC 2581 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 ||||| | || | |||| || | |||| |||||||| ||||||||| ||||||| Sbjct 2580 TGAGCAAGACCTACTATTGTTGAAGCTAAAGATGCTTCACCATGATGATATGCTGAATGC 2521 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAAT 65266 |||| ||||| || |||||||| ||||| ||||| | |||| || | ||| || Sbjct 2520 TCAGCAACATAACCTGATAATTGAGCCACTTTGATTTCTCCT-TTAAGTTTTCTTTTAAA 2462 Query 65267 GCA-GAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAAT--- 65322 ||| ||||| |||||||||| | | || | |||||||||| ||| || || Sbjct 2461 GCATGAATATAATATTTTCCTTTGTCCTGGCTTTAGACCATCCATTATATTTGGTATTGA 2402 Query 65323 GCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTC 65376 ||| ||| |||||| || || ||| | || | |||||| | |||||||| Sbjct 2401 TCTTATGT---TATCATAATTAGAAAAAAGAATAAGTTCTTTATGGATAAATTC 2351 >seq1968 Length=54100 Score = 118 bits (130), Expect = 5e-22 Identities = 490/754 (65%), Gaps = 53/754 (7%) Strand=Plus/Plus Query 64882 AGTACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGG 64941 |||||| ||||||| |||||||| | |||||| | |||| ||| || || ||||| Sbjct 22580 AGTACTCCATCCTGTTCCAATACCTTCACTGCCATTAACCAAAACCATAGGGATTATTGG 22639 Query 64942 TGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCA-- 64999 | ||||| | |||||||| | | | ||||| || ||| | ||||| | Sbjct 22640 TACATAATATATAGGCTCTATTCTTTGTCCATCTTCTATTTGATA--TGAAAATAAAAAG 22697 Query 65000 TCATCCTCTTTTGGAAATATAGAACGAGTTA--TTTTATTCAATTGAGTATAAATATATC 65057 || || |||| | ||||| | |||| | | || | ||| || | ||||| | Sbjct 22698 TCGTCTTCTTGGAGGAATATTTTTCTTGTTAAATGTGATAGATTTG--TAAAGATATACC 22755 Query 65058 TTTCGGATGCGTGGTCTTGTCCAG---TTCGTCGTGTTCCAAACTGACCATTTGGCATTA 65114 || | ||| |||| ||| | || ||| ||||| || || |||||||| Sbjct 22756 TTGGGCTTGCCATATCTTTACCACCCATATTTCTTGTCCCAAATTGTCCTAATGGCATTA 22815 Query 65115 ATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTA 65174 ||| || |||||||| ||| | |||||||||||| | || | |||| | || | Sbjct 22816 ATAGGTTTATATTGTTGCTACCGACAAAATTCTGAGCTAAGCCTACTATTGTTCCAGCCA 22875 Query 65175 AACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAA 65234 | ||||| || ||||| || |||||||||||| ||||| || | |||||| | Sbjct 22876 ATGAAGCTTCGCCATGATGGTAGGCTGAATGTTCAGCAACATAACCTGAGAGTTGAGCGA 22935 Query 65235 CTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCG-TAAACTA 65293 |||||||||| | | | | || |||| || |||| | | |||||||| | | || Sbjct 22936 CTTTTATTTCTGATCTAAGTTTTCTTTTGAAACAAGAAAAGAGGATTTTCCGCTGACCTG 22995 Query 65294 ATTTTCAATCCATCCATTA-AATTAGGAATG--CTTCTGTCACAATCATATTTTGAGAAA 65350 ||| | |||||||| | | || ||| || ||| ||| ||||| || || ||| Sbjct 22996 GCTTT-AGACCATCCATGACACTTGGGATTGACCTTATGT---TGTCATAGTTAGAAAAA 23051 Query 65351 TGTATGAATTCTTTGTTAATAAATTC------TTC-ATATGAAAC--ACTCGTATTATCT 65401 |||| ||||| | | ||||||||| ||| || | | || |||| ||||| Sbjct 23052 AGTATTAATTCCCTATGAATAAATTCGCTGAATTCAATTTTAGACTGACTC---ATATCT 23108 Query 65402 GTATTCAAATAACTATCGCGATTATATTTTTCTAACCATTCTTTTCTATCACTTGAGC-G 65460 ||||| ||| |||| || ||||||||| |||||||||| || | Sbjct 23109 ------AAATATGTATTTGGATTGAGATTGGCTAACCATTGTTTTCTATCATCTGCTCTT 23162 Query 65461 TTTTTATTAAATATTAAATCAATGGTCTCATCACTTTCTTT-GCCTGTATGTTCAAATCC 65519 ||||||||||| ||| ||||| | || ||| ||||| || | ||| || | Sbjct 23163 TTTTTATTAAAAGCTAAGTCAATCGCATCCTCA---TCTTTAGCATCATCTTTCCAAACA 23219 Query 65520 AA--CAATTTT----CTTT---TGTT--TAAAATATTCACGAAATTCTTTTCCTGTGCTT 65568 || ||||| | || | ||| ||| ||||| || |||||| ||| Sbjct 23220 AACTCAATTCTATGCCTGTCCAAGTTAGAAAAGTATTCCTGAGCTTCTTTATTTGTTGAA 23279 Query 65569 GTTCCAAGACCTTTATAATATTTGATTTTCCAAG 65602 |||||||| |||||||| || || |||||||||| Sbjct 23280 GTTCCAAGTCCTTTATAGTACTTTATTTTCCAAG 23313 >seq2189 Length=43340 Score = 107 bits (118), Expect = 9e-19 Identities = 205/301 (68%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| || || ||| | | | ||| |||||||| || | | |||| Sbjct 2985 TCGAGTGCCAAATTGCCCTAATGGTAAAAGAAGATTGATATTGTTACTTCCTACATAATT 2926 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATG 65205 |||||| | || | |||| || | |||| |||||||| ||||||||| ||||||| Sbjct 2925 CTGAGCTAAACCTACTATTGTTGAAGCTAAAGATGCTTCACCATGATGATATGCTGAATG 2866 Query 65206 TTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAA 65265 ||||| ||||| || ||||| || |||||||| || | | | ||| ||||||| Sbjct 2865 TTCAGCAACATAACCTGATAATTGGGCTACTTTTATCTCTCCTTTAAGTTTCCTTTTAAA 2806 Query 65266 TGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAAT--- 65322 ||| | | |||||||| | | ||| | |||||||||| | | || || Sbjct 2805 ACATGAAAATATTATTTTCCTTTGTCCTGGTTTAAGACCATCCATTATACTTGGTATTGA 2746 Query 65323 GCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTCTTCATA 65382 ||| ||| |||||| || || ||| | |||| ||||||| |||||||| | ||| Sbjct 2745 CCTTATGT---TATCATAATTAGAAAAAAGAATGAGCTCTTTGTGGATAAATTCATTATA 2689 Query 65383 T 65383 | Sbjct 2688 T 2688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235672451464200