Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2223 102 5e-17 seq2459 91.5 9e-14 seq1753 86.0 4e-12 seq1260 86.0 4e-12 seq156 86.0 4e-12 seq1 86.0 4e-12 seq2191 84.2 1e-11 >seq2223 Length=42303 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||||||| | | ||||| || ||||| ||| || |||||||| ||||| | Sbjct 21398 GCCACCTCTAAGTCTAAGAACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 21457 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | |||| | | |||||||||||||| ||||||||||| | | ||||| || || || Sbjct 21458 TAAGGTTCTCCCATCTTCAAGTTGTTTTCCGGCAAATATGAGTCTTTGTTGATCAGGGGG 21517 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||||| |||| | ||| | || |||||| Sbjct 21518 AATTCCTTCTTTGTCTTGTATCTTAGCCTTTACATTTTCAATGCTATCAGATGACTCCAC 21577 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || ||||| || || || || || ||||||||||||||| Sbjct 21578 ATCAAGAGTAATAGTTTTTCCAGTCAAAGTCTTAACAAAAATCTGCATG 21626 >seq2459 Length=32074 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||||||||| || ||||||||||| || || | | |||| | ||| Sbjct 25529 AAGACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCAGCTAAGGTTCTTCCATCT 25588 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 ||||| || || || ||||| |||| ||||| || || || || | ||| || || ||| Sbjct 25589 TCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTATCT 25648 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| ||| ||| | ||||| || ||| || || | |||||||| Sbjct 25649 TGGAT-TTTTGCTTTTACGTTCTCAATTGAATCAGAAGACTCTACATCTAAAGTTATCGT 25707 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || || | || || |||||||| ||||| || || Sbjct 25708 CTTTCCTGTGAGTGTCTTAACAAAAATTTGCATATTTAT 25746 >seq1753 Length=65450 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGT-GTTCGCTCGTCT 34554 ||||| || | ||| ||| ||||| ||||||||||| | ||||| ||| | ||| Sbjct 9881 ACCAAGTGTAAAGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTTC---CATCT 9825 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 ||||| ||||| || |||||||| | | ||||| || || || | || || || ||| Sbjct 9824 TCAAGCTGTTTTCCAGCAAATATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 9765 Query 34615 GTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||| | ||||||| | ||| ||||| | || || || | || || || Sbjct 9764 TGGAT-TTTAGCTTTAACGTTTTCAATGCTGTCTGAGGATTCTACATCAAGTGTAATAGT 9706 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||| || || |||||||||||||| Sbjct 9705 CTTACCAGTTAGAGTCTTGACAAAAATCTGCAT 9673 >seq1260 Length=79673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | || ||| ||||| || || || ||||||||||||||||| | Sbjct 62408 GCCACCTCTCAGTCTCAGCACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAATCAGC 62467 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||||| | | ||||| | ||| || || ||||| || | | || || || || || Sbjct 62468 AAGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAGGAGG 62527 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCC 34656 | || || |||||| || ||| | ||| || | ||| ||||| || | || Sbjct 62528 GATGCCTTCTTTGTCT-TGTATTTTCGCTTTCACATTTTCAATACTGTCTGACGAT-TCT 62585 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| ||||| || ||||| || || || || || ||||| Sbjct 62586 ACATCTAAAGTTATAGTTTTCCCAGTTAAAGTCTTGACGAATATTTGCAT 62635 >seq156 Length=23114 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | || |||||||| ||||| || |||||||||||||| |||| Sbjct 22139 CCACCTCTAAGTCTTAATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCT 22198 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| || || || || ||||| || | ||| || || || || || Sbjct 22199 AAGGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGA 22258 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| ||| | ||| || | ||||| || || || Sbjct 22259 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTAC 22317 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || | ||| ||||| || || || | || || |||||||| ||||| || || Sbjct 22318 ATCTAAGGTAATCGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATATTTAT 22371 >seq1 Length=265894 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || |||||||| || ||||| ||||||||||| || | | |||| | ||||| Sbjct 160829 ACTAAATGGAGTGTTGATTCCTTCTGAATGTTATAGTCAGCTAAGGTTCTGCCATCTTCC 160770 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| |||||||| || | | |||||| || || || | ||| ||||| ||| || Sbjct 160769 AATTGTTTCCCGGCAAAAATAAGTCTCTGTTGATCAGGGGGGATTCCTTCCTTATCT-TG 160711 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | || | |||||| | ||| |||| || || |||| || || ||||| Sbjct 160710 AATCTTAGCTTTAACATTTTCAATGCTGTCAGATGATTCAACATCCAAAGTGATGGTTTT 160651 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| ||||| || || ||||| || |||||| Sbjct 160650 ACCAGTTAAGGTCTTGACAAATATTTGCATG 160620 >seq2191 Length=126925 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 ||||||||||| || || ||| || || |||||||| |||| |||||||| | | ||| Sbjct 117854 AACACCAAATGTAGTGTTGACTCTTTCTGGATGTTATAGTCTGCAAGTGTTCTCCCATCT 117795 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||| || || ||||| || | | ||| || || || || | ||| || || ||| Sbjct 117794 TCTAATTGCTTGCCTGCAAAAATAAGTCTCTGCTGATCAGGGGGAATTCCTTCTTTATCT 117735 Query 34615 GTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| ||||| | ||| | ||| ||| || || | ||||| || Sbjct 117734 -TGAATTTTTGCCTTAACATTTTCAATACTATCTGAAGACTCTACATCTAGAGTTATTGT 117676 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || | || || ||||| || ||||| Sbjct 117675 TTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 117643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719519604324