Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1842 154 1e-32 >seq1842 Length=60065 Score = 154 bits (170), Expect = 1e-32 Identities = 478/719 (66%), Gaps = 33/719 (5%) Strand=Plus/Minus Query 118351 GCATGTTTG---TAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTG 118407 ||||| ||| |||||||| | | | ||| |||| |||||| |||||| ||||| Sbjct 52475 GCATGCTTGAGATAGTTTTCAAGTTTGATATCAGCAAAAGTAAAGTTTTCTATGTTTTTA 52416 Query 118408 AT--ATCCTT---GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGA 118462 | || | |||| ||| |||||| ||| | || | || || | ||||| Sbjct 52415 ACGGATGGGTTAAGTTTGAGGAC----TGGGAAT-GGGTGTGGATGTCTAGTTAATTGGA 52361 Query 118463 GTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATT 118522 ||| ||||||||||| || || |||| ||||||| ||| ||||| ||| | ||| | Sbjct 52360 TTTTAAGTGGCTCAATATGGTTTGTATAAACATGAGTATCTCCAATAACATGAACGAAGT 52301 Query 118523 CACCAGGT-GTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCT 118581 |||| | ||||| | | |||||||| | | |||| || | |||||| || Sbjct 52300 CACCTCTTTGTAAGTCACAA-ACTTGAGCAATTAAGCATGTTAATAGTGAGTAGCTTGCA 52242 Query 118582 ACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGC 118641 |||||||||||||| || | |||||| || |||||||||| |||| |||| ||| Sbjct 52241 ACATTAAAAGGAACGCCTAAACCCATATCGCCTGATCTCTGATACATAAGGCAGTTGAGT 52182 Query 118642 TCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTC 118701 | || ||| | ||| ||||||| | | | || || ||||||| | |||| || | Sbjct 52181 TTTCCATTTTCTACAAAAAACTGGCAAAGAACATGGCAAGGAGGCAAAGCCAT--AAAT- 52125 Query 118702 AGTTGGG---CAGGATTCCAGGCTGTTAAAAC-ATGCCTTCTGCTATATGGTTCTACCTG 118757 |||| | ||||||||| || | | || || | || || || ||| | Sbjct 52124 GGTTGAGATTTAGGATTCCAAGCACTCATTACTATACGACGTG-AATCAGGATCTGTTTT 52066 Query 118758 TATACCCTCAATTAAATTCTG-AATCTGATCCACACCCTTTCCAGTATACTGAG-ACTCG 118815 |||| | || ||| ||||| || |||||| || || | ||||| | || | || Sbjct 52065 TATAAGTTTAA-TAACTTCTGCAAGCTGATCAACTCCTTGGTTTGTATAGTCAGCATTCA 52007 Query 118816 CATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCT 118875 || ||||||| || |||||| ||||||||| ||||| ||||| ||||| |||||| Sbjct 52006 TAT-TAGTATATTCAGCTCCAAAATGTCTCCATTGGAAACCGTAAACTGGCCCTAGATCT 51948 Query 118876 CCCTGGGACCTAAAATCTAAACCTACTTT-TCTCTGAAATTCTT--TTGACCCATTAGCA 118932 || ||| || || || | ||| ||| ||||| | | || ||||| ||| Sbjct 51947 CCAACTTCTCTATCATTAAAGCCGAGTTTATCTAAGAAATCCCTACTT---CCATTTGCA 51891 Query 118933 TTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAAC 118992 | ||| ||| || ||||| | ||||||| ||||| || || | |||| Sbjct 51890 TCCCAGATATGGACACCTTTAGCACTTAATTCATTAGCATTTGTGCTTCCTCTAATAAAC 51831 Query 118993 CAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 || | || || ||||| || || ||||||| ||| |||||||||||| | ||| || Sbjct 51830 CATAAGAGTTCTTCAACCACTGCTTTCCAAAACACTAATTTTGTTGTAAATATTGGGAA 51772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414463524826192