Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1753 100 2e-16 seq2223 93.3 3e-14 >seq1753 Length=65450 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| ||||| || ||| ||| ||| |||| ||||| | Sbjct 9445 ATGCAGATCTTTGTCAAAACCCTTACAGGAAAAACTATAACACTTGACGTCGAGTCTTCA 9504 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| ||||| || ||||||||| |||| || || Sbjct 9505 GACAGTATTGAAAATGTCAAAGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 9564 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| || | || || || |||||||||||||| || | | | ||| | ||||| ||| Sbjct 9565 CAAAGGCTTATCTTCGCTGGAAAACAATTGGAAGATGGTAGGACTTTGGCTGATTATAAC 9624 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||||| || || ||||||||| Sbjct 9625 ATCCAAAAAGAGTCAACATTACATTTGGTT 9654 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || ||||| ||||| || ||||||| ||||||| ||| | | Sbjct 9673 ATGCAGATTTTTGTCAAGACTCTAACTGGTAAGACTATTACACTTGATGTAGAATCCTCA 9732 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || ||| ||||| || ||||||||| |||| || || Sbjct 9733 GACAGCATTGAAAACGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9792 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| || | || ||||| |||||||| | || || | | | | ||| | ||||| ||| Sbjct 9793 CAAAGGCTTATATTTGCTGGAAAACAGCTTGAAGATGGAAGGACTTTGGCTGATTATAAC 9852 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||||| ||||| || |||||| Sbjct 9853 ATCCAAAAAGAGTCAACTTTACACTTGGTT 9882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| ||| ||| ||||||| || | Sbjct 9901 ATGCAAATCTTTGTTAAAACTTTGACTGGAAAAACTATCACACTTGATGTTGAGTCTTCT 9960 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| ||||| || ||||||||| | || || || Sbjct 9961 GATAGTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCCCCTGATCAA 10020 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | || ||||| ||||||||| | || || | | | | ||| | ||||||||| Sbjct 10021 CAAAGACTTATCTTTGCAGGAAAACAACTTGAGGATGGAAGAACTTTGGCTGATTACAAC 10080 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || ||||| ||| ||||||||||| ||| Sbjct 10081 ATTCAAAAGGAGTCAACTTTGCATTTAGTT 10110 >seq2223 Length=42303 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| |||||||||||| |||| || || ||| ||||||| ||| Sbjct 22690 GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGACCAACAAAGGTTAATCTTT 22631 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || |||||| | || || | | | | |||| | || |||||||||||||||||| Sbjct 22630 GCAGGCAAACAACTTGAAGATGGAAGAACCTTGGCTGACTACAACATCCAAAAAGAGTCA 22571 Query 27985 ACTTTGCATTTGGT 27998 |||||||| ||||| Sbjct 22570 ACTTTGCACTTGGT 22557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || ||| | ||||| ||| ||| ||| ||||||| ||| | Sbjct 21853 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAAACTATCACACTTGATGTTGAATCTTCA 21794 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| ||||| || |||||||| |||| || ||| Sbjct 21793 GATAGTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAG 21734 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | || ||||| ||||| ||| | || || | | | | || | ||||| || Sbjct 21733 CAAAGACTTATCTTTGCAGGAAAGCAACTTGAGGATGGAAGAACTTTAGCTGATTATAAT 21674 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||||||| || |||||||||||| | | ||| | || ||| Sbjct 21673 ATTCAAAAAGAGTCAACATTGCATTTGGTTCTTAGATTGAGAGGAGGC 21626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851002172156