Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2191 98.7 9e-16 seq1993 98.7 9e-16 seq114 98.7 9e-16 seq2223 96.9 3e-15 seq1753 95.1 1e-14 seq1581 95.1 1e-14 >seq2191 Length=126925 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 || ||||| | || ||||| || | ||||||||||||||| || |||||| || || Sbjct 117879 AACTTATTAA--CCACCTCTCAATCTTAACACCAAATGTAGTGTTGACTCTTTCTGGATG 117822 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 ||||| || |||||||||| | || || | || ||||| ||||| ||||| | |||| Sbjct 117821 TTATAGTCTGCAAGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTCTGC 117762 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATC 39224 || || | ||| | | ||||| | | ||| ||| || || | | | | |||| Sbjct 117761 TGATCAGGGGGAATTCCTTCTTTAT-CTTGAATTTTTGCCTTAACATTTTCAATACTATC 117703 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || | || || |||| || || || || ||||||||||||||||| Sbjct 117702 TGAAGACTCTACATCTAGAGTTATTGTTTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 117643 >seq1993 Length=52953 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| | ||| || ||||| || || |||||||| ||||||||||| ||| Sbjct 24539 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGCA 24480 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || | |||||||| ||||||||||| | || || || | || Sbjct 24479 AGTGTTCTACCATCTTCTAATTGTTTGCCAGCAAATATAAGTCTTTGTTGATCTGGAGGG 24420 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || |||||| ||||| | | | |||| || || || Sbjct 24419 ATACCTTCTTTATCTTGGATTTTAGCTTTGACGTTTTCAATACTATCTGATGATTCAACA 24360 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || ||| | || || ||||| ||||| || ||||||||||| Sbjct 24359 TCTAAAGTTATAGTCTTGCCTGTCAGAGTTTTGACGAAGATTTGCAT 24313 >seq114 Length=105167 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| | ||| ||||| || || || |||||||| || || ||||| || Sbjct 3448 CCACCTCTTAATCTTAAGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAATCAGCT 3507 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| | | || |||||||| || || ||||| || || ||||||||||| | || Sbjct 3508 AAGGTTCTTCCATCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGGTCTGGAGGA 3567 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| |||||| || | || | | | ||| ||||| || Sbjct 3568 ATTCCTTCTTTGTCTTGGATTTTTGCCTTCACGTTCTCAATTGAATCAGAAGACTCTACA 3627 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | || || | ||||| || || || |||||||| |||||||| |||| Sbjct 3628 TCTAAAGTTATCGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCATATTTA 3679 >seq2223 Length=42303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || ||||||||| || | | |||||||| | || |||||| Sbjct 21610 TAACAAAAATCTG--CATGCCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTT 21667 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||||||||| || | |||| | | || ||||| || || || ||||| ||||| Sbjct 21668 TTGAATATTATAATCAGCTAAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAG 21727 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||||| || | ||| | | ||||| || |||||| ||||| | | | Sbjct 21728 TCTTTGCTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGAT 21787 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||| || || || || | |||||| ||||||| || | || |||||||| || Sbjct 21788 ACTATCTGAAGATTCAACATCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAAT 21847 Query 39279 TTGCATC 39285 |||||| Sbjct 21848 CTGCATC 21854 >seq1753 Length=65450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | | || ||||| | || ||| ||||| || || ||||| || Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| | | || ||||| ||||| || ||||| ||||| | || || || | ||| Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || |||||| ||||| | | | |||| ||||| || Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| ||||||| |||| |||||||||||||||||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACC-AAATGTAGCGTGCTCTCTTTTTGTATATT 39107 ||||| |||| ||||| ||| ||| | | ||||| || || |||||| || ||||| Sbjct 10362 TTATT--AGCCACCTCT-AAGTCTAAGAACTAAATGAAGAGTCGACTCTTTCTGAATATT 10306 Query 39108 ATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTG 39167 |||||| || | |||| | | || ||||| || || || ||||||||||| | ||||| Sbjct 10305 ATAATCAGCTAAGGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTGCTG 10246 Query 39168 GTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCT 39227 || | || | | ||||| || ||||| ||| | | | | ||||| Sbjct 10245 ATCAGGAGGAATTCCTTCTTTATCTTGTATTTTAGCTTTCACATTTTCAATACTATCGGA 10186 Query 39228 CGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || | || ||| ||||||| |||| || |||||||| || ||||| Sbjct 10185 TGACTCCACATCAAGAGTAATAGTTTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 10129 >seq1581 Length=69860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | | ||| ||||| || || || |||||||| || ||||| || || Sbjct 28548 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCT 28607 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| | | || || ||||| || || ||||| ||||| |||||||| || | || Sbjct 28608 AAGGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAAGATAAGGCGCTGCTGATCAGGAGGA 28667 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| |||||| || | || | | | ||| ||||| ||| Sbjct 28668 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGAATCAGAAGACTCTACG 28727 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | || || | ||||| || || || ||||||||||||||||| |||| Sbjct 28728 TCTAAGGTAATTGTCTTTCCTGTGAGAGTCTTAACAAAGATTTGCATATTTA 28779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429531842191364