Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1417 250 2e-61 seq2384 228 7e-55 seq2033 174 1e-38 >seq1417 Length=75703 Score = 250 bits (276), Expect = 2e-61 Identities = 580/868 (67%), Gaps = 15/868 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| |||||| |||||||| || || || | | ||||| | ||||| | ||||| Sbjct 13660 ACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGAAATCATCTCCATCCACTCAAAA 13719 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | | || || ||| ||||| || ||| | ||| |||| || || | | Sbjct 13720 GGATTTGCCACTTTATATATTTTCTCACATCCTAAAGCAATAAGTAATCTATCCGCAATA 13779 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 ||||| | ||| || ||| || | || |||||||| ||| || |||| || Sbjct 13780 AATTCAAGATATTGAGACATAAGCCTTGAATTCATTCCAATCAATTCAACTGGTAAAGCT 13839 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || | |||||||| ||| || | | ||||| || ||||||| || ||| Sbjct 13840 TCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACGAATCATATCTTGAATAACTTCT 13899 Query 4512 TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCT 4571 | | | | ||||| || | || | | || ||||| |||||||| ||| |||||| Sbjct 13900 TGTGGTAGCTTATTAACAATGTGAGTATATAACAAACAAGCAAAATCTGTATGTAAACCT 13959 Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA---AACCTCTCTTT 4628 || ||||| || || ||||| |||||||| || | || ||||| | ||| | ||| Sbjct 13960 TCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGCATAAGTGAACGT---TTT 14016 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| || || | ||| |||||||||||| || ||||| || || ||| | Sbjct 14017 TTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAAAATACCTTCAACTGCAGCATAT 14076 Query 4689 GCTACTAATCG--GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 ||||| | || || | || | | || || | ||||||||| || ||||| | Sbjct 14077 GCTACAAGTCTTTGGGC---AA--AACATGCACTGCTATCAATCCATTTCAAAGCCCAAT 14131 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806 ||||||||| |||| | || ||| ||| || |||| |||| | ||||||| Sbjct 14132 CAGCTTTTTTTTTAATCGATTCAAAGTTGTTTATTGCATTAAGTAATATGTTTTTTTCTT 14191 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 || |||| ||||| ||||| |||| | ||| | ||| ||||| ||||| | Sbjct 14192 GAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCACTGTGTATGTTTTCCA 14251 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||||| |||||||| ||||| || |||||| | | ||||||||| |||||| Sbjct 14252 TAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGAACTTCACAGAAAAATC 14311 Query 4927 TTTCTACTAAG-TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | || ||| ||||| || || || ||| ||||||||||| || ||||||| Sbjct 14312 TA-CTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAAAAAAGCTAAAACATAT 14370 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 |||||| | | ||| ||| | | | ||| ||| | | ||||| || ||| Sbjct 14371 TTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCTTAGATCTTGAGCCAAA 14430 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 |||| ||||| ||||||||| ||||| ||||||||||||| ||| ||||| Sbjct 14431 TCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTGTACATAGTCCAGATATCG 14490 Query 5106 GGATACTGAATCGGAAGTATGACAAATC 5133 || || ||||| | ||||| |||| Sbjct 14491 TTGTATTGTATCGGGAACATGACGAATC 14518 >seq2384 Length=116048 Score = 228 bits (252), Expect = 7e-55 Identities = 591/891 (66%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || || || || ||||| || || || || || |||| | || || | Sbjct 41574 TTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCAT 41633 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| | ||||| ||||| | || ||| ||| ||||| | ||| || | Sbjct 41634 CTCCATCCATTCAAAAGGATTTAATACGCGGTATAATTTATCACAACCCAAAGCAACTAA 41693 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 | || ||||| ||||| || | ||| || ||| || |||| || ||||| | Sbjct 41694 AAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAATAAG 41753 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || || || || | ||| | ||| |||| || || | ||||| || || Sbjct 41754 TTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAATAAT 41813 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 || | |||| ||||| || | ||||| |||| | | | | |||||| ||||| Sbjct 41814 TTCATAGATTTGATCTTGTGAAAGCTTATTAACTATATGTGAGTATAGTAAACAAGCAAA 41873 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| ||| | |||||| |||| || |||||||| || ||||| || | || ||||| Sbjct 41874 ATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCCTGGCAT 41933 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | | | ||||| | ||| ||||| ||| ||| |||||||||||| || ||||| Sbjct 41934 AAGAGAACGTTTTTTCATCCAGAATATTGCGCAAAAACTCCCAGAAAAGAAAATCCCTTC 41993 Query 4676 TACGGCGGCAAACGCTACTAATCG--GGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || || || | || || | || || | || |||| | || || |||||| Sbjct 41994 TATAGCAGCGTATGCAACGAGTCTTTGGGC---AA--AGCTATCGCTGCTATTTATCCAT 42048 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT-ATAGCGTTAAATAA 4792 || || ||||||| ||||| || |||| | |||| |||| | ||||| || ||||| Sbjct 42049 TTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAAA-GTGTGTGATAGCATTGAATAA 42107 Query 4793 TTTACTTTTTTCAAATGGGTCTTGA---ATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 |||||||||| | | | | | ||||| ||||| || || | ||| |||| Sbjct 42108 CATACTTTTTTC---TTGAACATTAGTGATATATGTGTCGATAAGCATCGAATAAGTTTC 42164 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 | ||| | |||||| || || ||||||||||| ||||| || ||| || | | ||| Sbjct 42165 ACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTG 42224 Query 4910 AACTTCGTTACAAAAT--CTTTCTACTAAGTTT-TCGTTTACTATACCGTCACTGGCTGC 4966 |||||| |||||| ||| || ||| || || ||| || || ||| || || Sbjct 42225 AACTTC---ACAAAAGAACTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAAGCAGC 42281 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 |||||| || || |||| ||||||| ||| | | ||||||||| ||| | Sbjct 42282 AAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTTTTCCCAATC 42341 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | || |||| || || || | |||||| |||||||||| ||||| ||| || Sbjct 42342 ACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATGTTTCTT 42401 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||| |||||||||| ||| || || |||| |||||||||||||| Sbjct 42402 ATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATCTGTT 42452 >seq2033 Length=51049 Score = 174 bits (192), Expect = 1e-38 Identities = 479/723 (66%), Gaps = 17/723 (2%) Strand=Plus/Minus Query 4420 AGTTAATTCCAATTAATCTCA-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTT 4478 |||| || ||||| ||| ||| | || || | | | | | ||| || | ||| || | Sbjct 9388 AGTTCATACCAAT-AATTTCAACTGGAAGAGTTTCTATAATAAATTCCTTTTCAATTTCT 9330 Query 4479 ACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCA 4538 | ||||| |||| || || |||| ||||| || | ||||| |||| | | | Sbjct 9329 ATAGCTTCACAAATTAATTCATTGATTTGATCTTGTGAAAGCTTATTGACTAGATGTGAA 9270 Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 | |||||||| | |||||| ||| |||| || |||||| || || |||| || ||| Sbjct 9269 TATAATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTTATGAGTTTATTTGAA 9210 Query 4599 AACGTTAATCCGGGCATTA---AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGAC 4655 | || | ||| ||||| | ||| | ||||| | ||| || || ||| ||| Sbjct 9209 GATGTGAGTCCTGGCATAAGTGAACGT---TTTTTCACCCAGAAGATGGCGCAAAAACTA 9153 Query 4656 CCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGG-GACCCGAACGAGCT 4714 |||||||| || || ||||||| || | || || | | || | ||| | Sbjct 9152 CCAGAAAAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGAGCAAAAC----T 9097 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 | | ||| || | |||||| || ||||||| |||||| || |||| | |||| || Sbjct 9096 GTCGCTGTTATTTACCCATTTCAAAGCCCAGTCAGCTTTCTTTTTAATTGATGGAAG-GT 9038 Query 4775 GTAT-ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTA 4833 |||| ||| | || ||||| | ||||||| | || |||||||||||| || | Sbjct 9037 GTATTATATCATTCAATAACATGGTTTTTTCTTGAGCATCAGTAATATAAGTGTCGATAA 8978 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC 4893 | | | ||| || ||| ||||||||||| | ||||||||||| ||||| || Sbjct 8977 GCATGGAATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATCCATAAAAAGCTC 8918 Query 4894 TAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTT-TCGTTTACTATA 4952 ||| || | | ||||||||| | ||||| || || ||| || || ||| || Sbjct 8917 GAGCCTCAGGAATTTGAACTTCACAAAAAAAT-TTAGTAGCAAGATTCTCTAATACAATC 8859 Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA 5012 | ||| || |||||||| || |||| || || || || | ||||| | || Sbjct 8858 CTATCAGAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGTA 8799 Query 5013 AGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072 || |||| ||| | |||| |||| || || || | || |||| |||||||||| Sbjct 8798 AGATTTTCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACTA 8739 Query 5073 GCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAAT 5132 ||||| || || ||||||| ||| |||||| ||| || | |||| ||||||||| Sbjct 8738 GCTTCATGCTTCTTATACATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAAT 8679 Query 5133 CTG 5135 ||| Sbjct 8678 CTG 8676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427035922135124