Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1417 297 2e-75 seq2384 277 2e-69 seq2033 152 5e-32 seq1264 123 3e-23 seq1714 102 8e-17 >seq1417 Length=75703 Score = 297 bits (328), Expect = 2e-75 Identities = 616/904 (68%), Gaps = 31/904 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||| || |||| ||||| || | || | |||| || ||||| |||||||||| Sbjct 13632 CATAACCCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTG 13691 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | || || | ||||| | ||||| ||||| | ||||||| | |||| Sbjct 13692 CATAGAAATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCC 13751 Query 23325 TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGT 23383 ||| | | | | ||||| || | |||||||| ||||||| |||| || | | | | Sbjct 13752 TAAAGCAATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGACAT-AAGCCTTGAAT 13810 Query 23384 TTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAG 23443 | || || || | || ||||| | || ||| | || || |||||| || || Sbjct 13811 TCATTCCAATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAG 13870 Query 23444 CATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGG-ATATTTTAAATACT----- 23497 | || ||| || | ||||||||||| |||| | || | || | | Sbjct 13871 CTTCACGAATCATATCTTGAATAACTTCTT------GTGGTAGCTTATTAACAATGTGAG 13924 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 || | || ||||| |||||||| ||||| |||||||| ||||| || | |||||||| Sbjct 13925 TATATAACAAACAAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAG 13984 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||| | || ||||| | | |||||||| | ||| || || | | |||| | || Sbjct 13985 AAAATGTGAGACCAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAA-CAAAAGCTC 14043 Query 23618 CG-GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 | |||||||||||||| ||||| || ||| | || ||||| | | |||| |||| Sbjct 14044 CCAGAAAAGAAAATACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCA 14103 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAA--TTG 23734 | |||| |||||||| | ||||| ||| || ||| | | |||| ||| Sbjct 14104 CTGCTATCA---ATCCATTTCAAAGCCCAATCAGCTTTTTTTTTAATCGATTCAAAGTTG 14160 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTT-CTTCATTATCTGTTATATATGTATCAATT 23793 ||| ||||| || ||| | | ||||||| ||| | |||| ||||||| || || ||| Sbjct 14161 TTT--ATTGCATT-AAGTAATATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATT 14217 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 | | | ||| | ||| || || ||||| |||||||| ||||| |||||||| | Sbjct 14218 AACATAGAATAAGTCTCACTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCT 14277 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 | |||||||| | |||||| ||| |||||||| | || | |||||| ||||| Sbjct 14278 CGAGCTTCAGGGATTTGAACTTCACAGAAAAATCTACTGGCAAGATTTTCTAAGACAATT 14337 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||| ||| ||||| ||||| | |||||||||||||||||| ||||||||| | Sbjct 14338 CCATCAGAAGCTGCAAAAAAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTC 14397 Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 ||| ||| |||||| | | ||||| | ||||||| || || |||||||||||| Sbjct 14398 AATGTTTCCCAATCTCTTAGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTT 14457 Query 24034 GCCAAGGCACGC---TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACG 24090 || || || || ||||| ||| ||||| || | |||||| || || || ||| Sbjct 14458 GC---TTCATGCTTTTTGTACATAGTCCAGATATCGTTGTATTGTATCGGGAACATGACG 14514 Query 24091 AATC 24094 |||| Sbjct 14515 AATC 14518 >seq2384 Length=116048 Score = 277 bits (306), Expect = 2e-69 Identities = 624/921 (68%), Gaps = 39/921 (4%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||| || |||||||||| || | |||||| |||| ||||| ||||||||||| | Sbjct 41562 CATAACTCCTGTTTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTG 41621 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAA-----GTATTATATACAGCTTTA 23319 | |||||| | ||||| | ||||| ||||| | |||| || || | | Sbjct 41622 CATTGATATCATCTCCATCCATTCAAAAGGATTTAATACGCGGTATAATTTA-----TCA 41676 Query 23320 CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 || || | |||||| ||||| || ||||| |||| ||||||| |||| || | Sbjct 41677 CAACCCAAAGCAACTAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACAT-AAGCCT 41735 Query 23380 T-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 | |||| ||||| || |||| |||||||| || || || ||| ||| ||||| Sbjct 41736 TGAGTTCATACCAATAAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTC 41795 Query 23439 AACAGCATCTTTAATTATTTGAACAAT---AACTTCTTCACTAGGTGGATATTTTAAATA 23495 || ||| || ||| |||| | || | ||| | | || | |||| ||| Sbjct 41796 AATAGCTTCACGAATAATTTCATAGATTTGATCTTGTGAA--AGCT---TATTAACTATA 41850 Query 23496 CTTAA--ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 | | | | |||||| |||||||| ||| || |||||||| | ||| |||| |||| Sbjct 41851 TGTGAGTATAGTAAACAAGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCA 41910 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || |||||||| | |||||||| | |||||||| ||||| |||||||| ||||| Sbjct 41911 TTGGAAAATGTGAGCCCTGGCATAAGAGAACGTTTTTTCATCCAGAATATTGC-GCAAAA 41969 Query 23614 GATCCG-GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA--T 23670 ||| ||||||||||| || || | ||| || | || || || | | |||| | Sbjct 41970 ACTCCCAGAAAAGAAAATCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCT 42029 Query 23671 GTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA 23730 | || | || | | ||||||| | ||| | || ||| ||| | | | Sbjct 42030 ATCGC-TGCTATTTA----TCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGA 42084 Query 23731 AT-TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATC 23789 | ||| | | | || || || | | | ||||||||| | || || |||||||| || Sbjct 42085 AAGTGTGTGA-TAGCATTGAATAACATACTTTTTTCTTGAACATTAGTGATATATGTGTC 42143 Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 || || | ||| ||||| ||||| |||||| || || |||||||| |||||||| Sbjct 42144 GATAAGCATCGAATAAGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAA 42203 Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 | || ||| |||| | |||||| ||| ||| || | |||| | ||| || || Sbjct 42204 AGCTCGAGCCTCAGGAATTTGAACTTCACAAAAGAACTTAGTAGCAAGATTCTCCAATAC 42263 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGT 23969 ||| |||||| ||||||||| ||||| | ||||| || ||||| |||||||||| | Sbjct 42264 AATCCCATCAGAAGCAGCAAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATC 42323 Query 23970 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | | ||||| ||||||| | |||| | || || | || ||| | |||||||| Sbjct 42324 AGTAAGTTTTTCCCAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAA 42383 Query 24030 ACTTGC--CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATT 24087 ||| || || | ||||||||| |||||||||| ||| |||||||||||| || Sbjct 42384 ACTAGCTTCATG--TTTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATG 42441 Query 24088 ACGAATCTATCAGATGATTCT 24108 || ||||| | || |||||| Sbjct 42442 ACAAATCTGTTAG--GATTCT 42460 >seq2033 Length=51049 Score = 152 bits (168), Expect = 5e-32 Identities = 596/917 (65%), Gaps = 55/917 (6%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||| || |||| ||| | || ||||| |||| | ||| |||||||| | Sbjct 9564 CATAACTCCTGTTTTCTGACACTCATTCACACGATTTTCAATAAAGTTTGTCTTGTATTG 9505 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA-CATG 23323 || || ||| | ||||| | ||||| ||||| | | | |||| |||| ||| Sbjct 9504 TATTGGTATTATCTCCATCCATTCAAAAGGATTTAATGCACGGTATAA---TTTATCATA 9448 Query 23324 A--TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT- 23380 ||| | ||||||||||||| | | ||| |||| |||||| |||| || || | Sbjct 9447 GCCTAAAGCTATTAAAAGCCTATCAGAAATAAACTCAAGGTATTGAGACAT-AAGTCTTG 9389 Query 23381 AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAA 23439 |||| ||||| || | || ||||||| | || ||||| || | |||||||| Sbjct 9388 AGTTCATACCAATAATTTCAACTGGAAGAGTTTC-TATAATAAATTCCTTTTCAATTTCT 9330 Query 23440 ACAGCATCT----TTAATT-----ATTTGAACA----ATAACTTCTTCACTAGGTGGATA 23486 | ||| || |||||| |||||| | | | ||| || ||||| || Sbjct 9329 ATAGCTTCACAAATTAATTCATTGATTTGATCTTGTGAAAGCTTATTGACTAGATG---- 9274 Query 23487 TTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAAT 23546 | |||| |||||||| | |||||| ||| | | || || ||||| || Sbjct 9273 ---TGAATAT------AATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTTAT 9223 Query 23547 CAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGC 23606 | || ||| ||| |||| | ||||||||| | | |||||||| | ||| || || || Sbjct 9222 GAGTTTATTTGAAGATGTGAGTCCTGGCATAAGTGAACGTTTTTTCACCCAGAAGATGGC 9163 Query 23607 AGCAAATGAT-CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC 23665 ||||| | || ||||| ||||| || || | | || | || ||||| | | | Sbjct 9162 -GCAAAAACTACCAGAAAAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGAG 9104 Query 23666 CAAA--TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC 23723 |||| ||| || | || | | |||||| | ||| | ||| ||| ||| | Sbjct 9103 CAAAACTGTCGCTGT-TATTTAC----CCATTTCAAAGCCCAGTCAGCTTTCTTTTTAAT 9049 Query 23724 ACACTCAAT-TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATAT 23782 | || ||| | | | | || || | | |||||||||| | ||| || |||| Sbjct 9048 TGATGGAAGGTGTATTATAT-CATTCAATAACATGGTTTTTTCTTGAGCATCAGTAATAT 8990 Query 23783 ATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACC 23842 | || || || || | ||| || |||||||||||| || | |||||||| | Sbjct 8989 AAGTGTCGATAAGCATGGAATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATC 8930 Query 23843 CATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTT 23902 |||||||| || ||| |||| | |||||| ||| ||||||| | |||| | ||| | Sbjct 8929 CATAAAAAGCTCGAGCCTCAGGAATTTGAACTTCACAAAAAAATTTAGTAGCAAGATTCT 8870 Query 23903 CGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 23962 | ||||| | |||| ||| ||||| ||||| | || || || || |||| | ||| Sbjct 8869 CTAATACAATCCTATCAGAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTT 8810 Query 23963 C---ATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAA 24019 | |||||| | |||| |||||| | | |||| || || || | || ||| Sbjct 8809 CGTTATCAGTA---AGATTTTCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAG 8753 Query 24020 CTGTCCAAAAACTTGC-CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATT 24078 | ||||||||||| || | || ||||||||| ||| |||||| ||| |||| | Sbjct 8752 CAGTCCAAAAACTAGCTTCATGC-TTCTTATACATAGTCCATATATCACTATATTGTTTG 8694 Query 24079 GGAAATATTACGAATCT 24095 ||||| || || ||||| Sbjct 8693 GGAAACATGACAAATCT 8677 >seq1264 Length=4287 Score = 123 bits (136), Expect = 3e-23 Identities = 256/373 (69%), Gaps = 21/373 (6%) Strand=Plus/Plus Query 64200 AAGGTTATATAAAGTTAATTTTGGGTCCTATGTTTTCTGGAAAAACAACAGAATTAGTTA 64259 ||||| | ||| | |||| || || || |||||||||||||| |||| || | | | Sbjct 925 AAGGTGAAATACAAGTAATCTTCGGGCCAATGTTTTCTGGAAAGTCAACTGAGCTCTTAA 984 Query 64260 GAATAGTTAAACGATATAAAATAGCAAACTATAATTGTT-GTGTAATAAAATATTATAAT 64318 ||| | | ||||||||||| ||| || |||| || ||||| | || Sbjct 985 GAAGGATACGAAGATATAAAATAAGAAATGATTCATGTTTGTTGCTTAAAACA----AAA 1040 Query 64319 GATAATAGATATTGTGAAGGAA----ATATAGTTAAAACACACGATGGA---AATTACAT 64371 |||| |||||| || || || ||| |||| |||||| |||| | |||| | | Sbjct 1041 GATACAAGATAT-GTAAATGATGATGATAAAGTTGTAACACATGATGAATACAATTTCCT 1099 Query 64372 TAATTCAATATCCAC--ATTAACCCTCAATGATATTA--TTTATGAAATGAATAACGTTG 64427 | || || ||| ||| | || |||| |||| | ||||||| | || Sbjct 1100 TGATGCACATTCCTGTGATTTTTTATATGAGAAATTAGATTTA-GCAATGAATTA---TG 1155 Query 64428 ATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAATA 64487 |||| ||||| ||||| |||||||| |||||||||||||| | | |||||||||| Sbjct 1156 ATGTGATTGGTATTGACGAAGGGCAGTTTTTTACTGATATTATCGGGTTTTCTGAAACCC 1215 Query 64488 TGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAAC 64547 |||| ||||| || |||| ||| ||| || || |||||| || |||| |||||||| Sbjct 1216 TGGCAAATAATGGGAAAACTGTTATTATTGCATGTTTAGATTCGGATTATAGAAGAGAAC 1275 Query 64548 CATTTGGTAATAT 64560 ||||||| ||||| Sbjct 1276 CATTTGGGAATAT 1288 >seq1714 Length=152600 Score = 102 bits (112), Expect = 8e-17 Identities = 205/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 64426 TGATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAA 64485 |||||| ||||| |||||||||| ||||| ||||||||||| || | |||||||| Sbjct 57912 TGATGTGATTGGTATTGATGAAGCACAATTCTTTACTGATATTATTCAGTTTTCTGAGCT 57971 Query 64486 TATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGA 64545 |||||| ||| || |||||| | || | | || || | | || |||||| Sbjct 57972 TATGGCAAATCTGGGTAAAATTATTATAATAGCTTGTTTGGACTCTGATTTTAGAAGAGA 58031 Query 64546 ACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAG-TAATAAAATTAAATG 64604 ||| ||||| ||||| | || || || ||||||||||| || |||| ||| | | Sbjct 58032 ACCTTTTGGGAATATTTGCCAACTTATTGCAAAAGCTGAAAAAGTTATTAAACTTACAAG 58091 Query 64605 CTATATGTAAAATATGTTTCAAAGATGCTGCATTTACT-AAAAGATTA-TGCAAAAGTAC 64662 ||| || | ||| ||||||| | |||| | | | ||| |||| || || Sbjct 58092 -TATTTGCCATTATTGTAAAGAAGATGCCTCGTTTAGTGCGAGGCTTACTGCAGAA--AC 58148 Query 64663 TGAAATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTGTAGAAAGTGTTAT 64720 || || || | ||||||||| ||||||||||| | |||||||||| |||||| Sbjct 58149 TGCGATAAAAGTTATTGGTGGAAGAGACAAATATAGGCCGGTGTGTAGAACTTGTTAT 58206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521470869119200