Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10217 132 3e-26 >seq10217 Length=2370 Score = 132 bits (146), Expect = 3e-26 Identities = 339/513 (66%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 ||| | ||||||||| || | || ||||||||||| || || || || || | ||||| Sbjct 913 AGCCAGCATGCAAGTCAATAAGGAGTAGCTAGCAATATTGAAAGGAACACCAAGACCCAT 972 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG---ACATAAAATTG 101877 |||| |||||||| ||||| || ||||| || ||| ||| | || || |||| Sbjct 973 ATCACATGATCTTTAATACATCTGGCAGGATAGTTTTTAGTCAGCGGTAACGTAGAATTA 1032 Query 101878 ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 | ||||| ||||||||| || | ||||||| | |||| ||||||| || | Sbjct 1033 AGCTAATATATGACAAGGAGGAAGAGCCATTTTCTTTAAATCTGCTGCATTCCAGGCGCT 1092 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTG 101997 ||| | || ||||| || || || | || || || || | | || ||| Sbjct 1093 CATCAGGATTCTTCTGCTAGTTGGATTGTTCTTAATTTAATTGATTACGTCAGCTAGTTG 1152 Query 101998 GTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCT 102057 || | ||||| ||||||| | | | ||| | ||||||||||| || Sbjct 1153 ATCGAATCCTTAATTAGTATAATCAGAATGCATAGTGTCGTATGCAGCTCCGAAATGTCT 1212 Query 102058 CCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTT 102117 ||| | ||| ||||| || || ||||| || | ||| ||||| || | || |||| | Sbjct 1213 CCATTAAAAGCCATAGACTGGCCCAAGGTCCCATTCCTCTCTTTCTTTCAAGCCAATTCC 1272 Query 102118 ATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGAT----- 102172 |||||| || |||| || |||| ||||||| || | | | || || Sbjct 1273 ATCTAAGAACTATCTTGAAGCATTACCATCCCAGAT-----CTTTATTTTCTTATCACTA 1327 Query 102173 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTC 102232 || | ||| | ||| |||| | | |||||| | || |||||| | ||||||||| Sbjct 1328 AGATTTTTTGCATTAGTGTCTCCTTTAACAAACCAGATTAGCTCTTCAGCTACACCTCTC 1387 Query 102233 CAAAATAC-TCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||||| ||| ||||||||||||| ||| || Sbjct 1388 CAGAATACATCT-TTAGTAGTTAAAATTGGGAA 1419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361163849459840