Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15602 235 7e-57 seq7211 183 4e-41 seq11890 167 3e-36 >seq15602 Length=1555 Score = 235 bits (260), Expect = 7e-57 Identities = 414/598 (69%), Gaps = 4/598 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||||||| ||| | ||| |||||||| ||| ||||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||| || |||||||| || ||||| || || || ||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTA 24312 | || || || || || || ||||| | |||||| || | | ||| | || | Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAA 878 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 |||| || | |||||||| || || || ||| || || | | | ||| || | Sbjct 877 TCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGA 818 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 ||||| | | |||||| | || ||| | || ||||| | |||| ||| ||| Sbjct 817 AGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTT 758 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | || ||||| || || ||| || ||||| ||||||||||||||||| | | | Sbjct 757 CACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTT 698 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | ||| | || |||| | || ||||||||||| ||||| |||||| || |||| Sbjct 697 AGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAA 638 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 24611 | || || | ||||| || ||||| | | | |||| || || ||| | | |||||| Sbjct 637 AGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCC 579 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 || ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| Sbjct 578 TTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTG 519 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||||| |||||||| |||| |||| || || | ||||||||||| |||||||||| Sbjct 518 TACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTT 461 >seq7211 Length=2975 Score = 183 bits (202), Expect = 4e-41 Identities = 748/1151 (65%), Gaps = 50/1151 (4%) Strand=Plus/Plus Query 53525 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA 53584 || ||||| ||||||||||||||||||||||| ||||||||||| ||| || || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 53585 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACT 53644 ||||| || |||||||| | ||| |||| ||||| || || || || || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 53645 TTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA---TCT---ATTACAAACATG 53698 ||| |||| | | || | | ||| | | | | ||| || ||||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 53699 TTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 53758 || | ||| ||||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || ||||| |||||||| | || || || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 53879 GCTTTCCAGACGACA-CGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTAT 53935 |||| | | || | |||||| || | ||| | ||| | ||||||| Sbjct 1505 TAGGTCCATA-GCCATCTAGCCTTGATCGTC--TTTCTTCCTCGTCCGGAAATTTCGTAC 1561 Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATC 53994 ||| | | ||||| || ||||||||| | |||| ||||| || ||||| | Sbjct 1562 TCCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGTT-AATCCTGGGCATTCGTT 1620 Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGG 54051 ||||||||||| | ||| ||| |||| |||| || | | |||| || | || || Sbjct 1621 GGGACACATCAATGTCCAGTCT---TCATTCTTCTCAACCCTTCTCATGAATAAGTCTGG 1677 Query 54052 AATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 |||||| ||||| ||| || |||||||| | ||| | || || || || ||||||| Sbjct 1678 AATCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTC 1736 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 | || | ||||| | |||||| | |||||| ||||| | || | | | | | | Sbjct 1737 TGAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCAC 1796 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 | | |||| ||||| ||||| | || || || |||| |||| |||| | | || Sbjct 1797 CTTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCA 1856 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGA 54289 | || || | ||||| || || || || || || | || || ||| | || Sbjct 1857 TAGGTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 54290 -ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 | | || | ||| | ||| || || || || || ||||| | |||| | | | Sbjct 1917 TGTCTGAC--ACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCT 1974 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AACAGCT 54405 || || ||| |||| || || || ||| || |||| ||||| |||| || | || Sbjct 1975 TAGAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT 2034 Query 54406 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 ||||| | | || |||||| | |||||| | || || | |||||| || | Sbjct 2035 ---CATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGA 2087 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGA 54520 |||| | | | || || || || || | |||||| |||| |||| | ||| ||| Sbjct 2088 ACCAAAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGA 2146 Query 54521 ATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT-GTTGTTT 54577 ||||| |||| ||| | ||| | |||||| || ||||| |||| || || | | | Sbjct 2147 ATTCCAATACT--GACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTGGATCCAT 2204 Query 54578 ATTTTCAGCAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 |||| | ||| |||| | | |||| ||| | || |||||||| | ||| |||| Sbjct 2205 CTTTTAA--AAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTC 2262 Query 54637 TCGTTCGTAAA 54647 || ||||||| Sbjct 2263 TCTGTCGTAAA 2273 >seq11890 Length=3034 Score = 167 bits (184), Expect = 3e-36 Identities = 701/1090 (64%), Gaps = 34/1090 (3%) Strand=Plus/Plus Query 53498 TCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 53556 ||||||||| | ||| ||| | |||| || || |||| ||| | |||||| |||||||| Sbjct 1110 TCAAATGGA-ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGAT 1168 Query 53557 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 53615 |||||||||||| |||| ||| ||| || || | | | |||||| ||||| ||| | Sbjct 1169 TGGTCTATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAA 1227 Query 53616 TAATTTTATTGAGGTTTCTGACAATTACTTTGACC---ACATCCTTCAGTTTGAGAAAAT 53672 | ||| | || || || || || ||| || || | | ||||| | ||| Sbjct 1228 TGATTCTGTTAAGATTCTTGGTAA---CTTAGAAAGTTACTTTATGAAGTTTCTCATAAT 1284 Query 53673 CAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 |||| ||||| | ||| | | | || || || || ||||| || || || | Sbjct 1285 CAAAGACTCCATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAA 1344 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 |||| | | | ||||| || |||||| || |||||| || ||| || |||| Sbjct 1345 TTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTC 1404 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||| | ||| || ||| ||| ||| |||||||| ||| | || |||| Sbjct 1405 CAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTAC 1464 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 | || ||||| | ||| ||||| | || ||| | ||||| || | || Sbjct 1465 CTGTCTCAATTTAACTTTCAATAATTGATTCCCAAAGTTTCATTGCCTTGATAGTC--TT 1522 Query 53913 TGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | | | | || ||| ||| ||||| || ||||||||| ||||| ||| Sbjct 1523 TCTTCCAATACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAAC 1582 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 | | | || ||||| ||||| | | | ||| || |||| || | || Sbjct 1583 TTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTAC 1642 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090 | ||||| || ||||| |||| ||| ||||| | |||| |||||| | ||| | ||| Sbjct 1643 CCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTC 1702 Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150 || ||||| |||||| | || | ||||| | | | ||||| |||||| || || Sbjct 1703 TTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTC 1762 Query 54151 CAAGTATATGGTCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCT 54204 ||||| || | | ||| || || | ||||| || || || | ||||| Sbjct 1763 TAAGTAGATAGCGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACATATCT 1816 Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 ||| || | ||| ||||||| | ||| |||| || ||||| || ||||| || || Sbjct 1817 AGCAGTTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCC 1876 Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 ||| || || || |||| | ||||| || | || || | || || || | Sbjct 1877 CTTGATGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACT 1936 Query 54325 TTTAGAGATTAATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCC 54382 ||||| || || || | |||| |||| |||||||| || || | ||| |||||| Sbjct 1937 CTTAGAAATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCC 1994 Query 54383 ATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAATA 54440 |||| | | || ||||||||| ||||| ||| | || || || || || | Sbjct 1995 TTCATCATTAAAAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCGTTGAAAA 2052 Query 54441 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTG 54500 ||||| | || || || |||||| | ||| | || || || ||||| || || | Sbjct 2053 GAGTAGGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAG 2112 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 || ||||| || || || ||||||| || | | | ||| ||||| ||||||| Sbjct 2113 CATCAATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTT 2172 Query 54561 CAACGATCTT 54570 |||||||||| Sbjct 2173 CAACGATCTT 2182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593574357043200