Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6367 113 4e-20 seq5287 82.4 7e-11 >seq6367 Length=732 Score = 113 bits (124), Expect = 4e-20 Identities = 175/249 (70%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 28941 TTTATAAGTAA-TAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 28999 ||||| | ||| ||| ||||||| | || ||| |||| || |||||||| || || || Sbjct 649 TTTATTATTAAATAGAAGAAAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTAT 590 Query 29000 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAA 29059 ||| || || ||| | || || | | | ||||| || ||| ||||| Sbjct 589 TACTCTTGATGTCGAGCCCTCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAA 530 Query 29060 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTC 29119 ||||||| | ||| |||||||||||||| |||||||| || || | |||||||| Sbjct 529 AGAAGGTATCCCCCCTGATCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGG 470 Query 29120 CAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 | ||| || | |||||||| || || || ||||| ||||||||| |||| || || | Sbjct 469 AAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACT 410 Query 29180 ACGAGGAGG 29188 ||||||| Sbjct 409 TAGAGGAGG 401 >seq5287 Length=1089 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||| | ||||| || || || || || ||| |||||||| | ||| | | ||| Sbjct 527 GATCAATAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGAT 586 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||||||||||||| ||| |||| || || | ||||||| Sbjct 587 TACAATATTCAAAAGGAATCTACTCTCCACTTGGTCCTAAGACTCAGAGGAGG 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428232428355200