Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6367 116 3e-21 seq5287 91.5 1e-13 >seq6367 Length=732 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 25014 TTTATAAGTAA-TAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 25072 ||||| | ||| ||| ||||||| | || ||| |||| || |||||||| || || || Sbjct 649 TTTATTATTAAATAGAAGAAAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTAT 590 Query 25073 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAA 25132 ||| || || ||| | || || | | | | ||| || ||| ||||| Sbjct 589 TACTCTTGATGTCGAGCCCTCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAA 530 Query 25133 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTC 25192 ||||||| | ||| |||||||||||||| |||||||| || || | ||||||||| Sbjct 529 AGAAGGTATCCCCCCTGATCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGG 470 Query 25193 CAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 | ||| || | |||||||| || ||||| ||||| ||||||||| |||| || || | Sbjct 469 AAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACT 410 Query 25253 ACGAGGAGG 25261 ||||||| Sbjct 409 TAGAGGAGG 401 >seq5287 Length=1089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||| | ||||| || || || || || |||||||||||| | ||| | | ||| Sbjct 527 GATCAATAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGAT 586 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||||||||| ||| |||| || || | ||||||| Sbjct 587 TACAATATTCAAAAGGAATCTACTCTCCACTTGGTCCTAAGACTCAGAGGAGG 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410697469333760