Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18584 114 2e-20 seq55 111 2e-19 seq5287 109 8e-19 seq6367 105 1e-17 seq18108 91.5 2e-13 >seq18584 Length=3078 Score = 114 bits (126), Expect = 2e-20 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 124543 AAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG--AAGCAAATGA 124600 |||||||| | || |||||||| || || ||||||||||| | |||| | | |||| Sbjct 2167 AAATATTTGTGAAAACACTAACTGGAAAGACTATAACTAT--ACATTGCTACTTAGATGA 2224 Query 124601 TACAATTTCTAAT--TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 | || || ||| || |||| || ||||| || ||||| || ||||| ||||||||| Sbjct 2225 TGAAA--TCGAATTATTTAAACTTAAGATTCAGGACAAAGAGGGAATACCTCCTGATCAA 2282 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 | || || || ||||| ||| | | ||||| ||| | | ||||| | || ||||| Sbjct 2283 TAGAGACTCATATTTGCCGGATCATAGTTAGAAGATCATTTATCATTAAATGACTATAAA 2342 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || |||||||| || | |||||||| ||||| ||| |||| || Sbjct 2343 ATAGAAAAAGAAAGTACACTCCATTTGGTATTACGATTAAGAGGAGG 2389 >seq55 Length=1219 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || ||||||||||| || | || |||| | | Sbjct 140 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCT 199 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| ||||||||||| ||||| |||||| Sbjct 200 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 259 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || ||||| ||| | ||||| | |||| | || || || Sbjct 260 CAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAAC 319 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| || |||||| | |||||||| Sbjct 320 ATCCAAAAGGAGTCAACTCTCCATTTGGT 348 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || ||||| || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 452 AAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTTATCTTTGCTGGAAAG 511 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| | |||| | || || || |||||||| || |||||| | ||| Sbjct 512 CAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCAAAAGGAGTCAACTCTCCAT 571 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 || || | | | |||||||||| |||| Sbjct 572 TTAGTCCTTAGACTCAGAGGTGGTATGTAAA 602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || || || || || | || |||| || Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATC 882 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | || || || | || || ||||| || ||||| ||||| Sbjct 883 AGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCA 942 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||| || || || || ||| | |||||| | |||| | ||| ||||| Sbjct 943 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAA 1002 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| || ||||| | || |||||| | | | |||||||| Sbjct 1003 CATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGGT 1051 >seq5287 Length=1089 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| || || ||||| || || ||| | || |||| || ||||| ||| || Sbjct 428 AAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCCGATACCATTGAAAAC 487 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| ||||||||||| || || || || ||||| |||||| | || || ||||| Sbjct 488 GTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAATAGAGACTCATTTTC 547 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||||| || ||| || |||| | |||||| ||||||||||| ||||| Sbjct 548 GCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAATATTCAAAAGGAATCT 607 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | || ||||| || | | |||| ||||| Sbjct 608 ACTCTCCACTTGGTCCTAAGACTCAGAGGAGGTAT 642 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || ||||| || | || ||||| || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||| | || ||||||||||| ||||| || ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| || ||||| || ||| | ||||| | |||| | ||| ||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 || |||| ||||| || | || |||||| || Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTA 853 >seq6367 Length=732 Score = 105 bits (116), Expect = 1e-17 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| |||||||||||||| || |||||||||||||| || || ||||| ||||| Sbjct 543 AAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAACAAAGACTCATCTTTGCCGGAAAG 484 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || ||| | |||| || ||||| || || ||||||||||||||| | || Sbjct 483 TAGTTGGAAGATGGAAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCAC 424 Query 124743 TTGGTTTT---ACGTTTACGAGGTGGT 124766 ||||| || || | | |||||||| Sbjct 423 TTGGTCTTGAGACTTAGAGGAGGTGGT 397 >seq18108 Length=1037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| ||||||||||| ||| | ||| ||| || || || ||||| || ||| Sbjct 719 AAAATTCAAGACAAAGAAGGTATTCCATCCGATTCACAGAGACTAATATTTGCTGGCAAA 778 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || || || |||| ||| || ||||| || |||||||||||||| | ||| Sbjct 779 CAGCTTGATGACGGTAGAACGTTATCTGACTATAACATCTAAAAAGAATCAACTATTCAT 838 Query 124743 TTGGT 124747 || || Sbjct 839 TTAGT 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755268646912000