Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq55 98.7 9e-16 seq5287 93.3 4e-14 seq6367 84.2 2e-11 >seq55 Length=1219 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| ||||| || || || | || | || ||| Sbjct 804 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTCG 745 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| | ||||| | || ||||||||||| || || ||||| ||| Sbjct 744 AGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTGG 685 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||||| | |||||| |||| ||| | || || Sbjct 684 ATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTTA 625 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || | ||| Sbjct 624 CCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || ||||| |||||||||||||| ||||| | || | ||| || Sbjct 576 ACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCTTCA 517 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| || | || |||||||| || || || ||||||||| | Sbjct 516 AGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 457 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| || || | || | || || Sbjct 456 ATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGTCTTT 397 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||| ||| Sbjct 396 CCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq5287 Length=1089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | ||| | |||||||||| ||||| || |||||||| |||||||| Sbjct 641 TACCTCCTCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTG 582 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || | || || || ||| | ||||| | || |||||||| | Sbjct 581 AGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTG 522 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| |||||| ||| || | ||| | ||| || | ||| | Sbjct 521 GGATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAA 462 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || |||||||| || || || || || |||| ||| Sbjct 461 CATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 >seq6367 Length=732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | | |||||| |||||||| | || || |||||||| ||||||||||| Sbjct 400 ACCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 459 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || | ||| || | || ||||| || ||||||| | || ||||| || || Sbjct 460 CAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGG 519 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || || || ||| || ||||| | |||| ||| || | | |||||| Sbjct 520 GATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTAT 118750 || | || | || || || |||| ||| || || || |||| ||| || |||||| Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACAT-TTTTCTTCTAT 638 Query 118751 T 118751 | Sbjct 639 T 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433725499809280