Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq55 111 2e-19 seq5287 98.7 1e-15 seq6367 95.1 2e-14 seq18108 86.0 9e-12 seq1212 84.2 3e-11 >seq55 Length=1219 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||||||||| | ||||| || | ||||| || || || ||||| || Sbjct 824 TTCCACCTCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCAC 765 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| ||||||| || || | |||||||||||| ||||| | |||||| ||||| |||| Sbjct 764 TAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAG 705 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| |||||||| Sbjct 704 GAATACCTTCCTTATCTTG 686 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| ||||| | || ||||| | ||| || || ||| || || || || || Sbjct 594 CCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGA-ATGTTGTAGTCGCT 536 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||||| ||| || | ||| ||||||||||| || | |||||| ||||| || || Sbjct 535 GAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGG 476 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 475 GATTCCTTCCTTGTCTTG 458 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | ||||| || | || || || || || ||||| |||||| Sbjct 1050 CCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAA 991 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||| || ||||| || || | |||||| ||||| || || Sbjct 990 AGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 931 Query 146171 ATTCCTTCTTTATC 146184 |||||||| || || Sbjct 930 ATTCCTTCCTTGTC 917 >seq5287 Length=1089 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||||| |||||||| | |||||||||||| || || || || || Sbjct 411 CCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 352 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || ||||| | |||||||| || || | ||| || ||||| || || Sbjct 351 AGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGG 292 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 291 ATACCTTCCTTATCTTG 275 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||||| ||||| || | || ||||| || | || ||||| |||||| Sbjct 867 CCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAA 808 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || | ||| || || || || || | |||||| || || || ||| Sbjct 807 AGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGA 748 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 747 ATACCTTCTTTGTC 734 >seq6367 Length=732 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || ||||| || | ||| |||||||| || || ||||| || Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || || | ||||| ||||| || | |||||| ||||| || || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 521 ATACCTTCTTTATCCTG 537 >seq18108 Length=1037 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || ||||||||||| || | || | ||| |||||||| | |||||| || || Sbjct 405 CCGCCCCTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAG 346 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| ||||| ||||| |||||||| || | ||| || | || | || Sbjct 345 AGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGT 286 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 285 ATGCCTTCCTTGTCTTG 269 >seq1212 Length=3033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| ||||||| | | ||||||||||| ||||||||| || || | |||| Sbjct 2332 ATATTATAATCCTTAAGAGTTTTTCCATCATCTAATTATTTTCCAGCGAATATAAGTCTT 2273 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||| ||| ||||| || ||||| |||| Sbjct 2272 TGCTAATCAGGAGGGATGCCTTCAATATC 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743342005452800