Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15602 127 2e-24 >seq15602 Length=1555 Score = 127 bits (140), Expect = 2e-24 Identities = 552/864 (64%), Gaps = 23/864 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || || |||| ||||||||||||||||| || ||||| ||| ||| ||||| | Sbjct 1346 TTCTGGTACTCACCGACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATG 1287 Query 16004 TCCATAAAATCAAAAGGATTTT----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 ||||| | ||||| ||||| | |||| ||||| || | | | || | ||| Sbjct 1286 TCCATCCATTCAAATGGATTCTCGACTTGA----TAGTACTT-TGGTACTCCTAGGGCAA 1232 Query 16060 CAATAA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 | || ||| || || || || || ||||| |||| | | ||||||| || | Sbjct 1231 ATAGAAGTCTGTCTGCAACGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGA 1172 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 | || | || || | || || ||| || | ||| ||| | || || | || Sbjct 1171 TCAACTCGACTGGTAGTGACTCACTTACGAACTCCAATTCAATAGTTACTGCGTTGGAGA 1112 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATA 16234 | || || | | | || || |||| |||| | | ||| || | | | | Sbjct 1111 TAATCTCAAGGATT-CTCTCGTT---GGAGATTTTATTGTTGATGTGCTTGTAGAGGAGA 1056 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || ||||| |||| |||||||| || || || || ||||| ||||| ||| Sbjct 1055 CACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGA 996 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 |||||||| || || || || || | ||| || || | | || || |||||||||||| Sbjct 995 CCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAAT 936 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || || ||||| || || || || || | || ||| || | | | | | | Sbjct 935 ATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAA---TTGAGCGGTCTCTCCA 879 Query 16415 atccattttttagcccaatttgctttttgtttAAC-ACAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||||| ||||||| || || | | || || | | || || Sbjct 878 ATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGT-ATATTGTGGACAGCTTT 820 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | | | | |||||||| || ||| |||| || || || | | ||| | Sbjct 819 GAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGT 760 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| || || |||||||| ||||| || ||||| || |||||||| || | | Sbjct 759 TTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCAC 700 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || | ||||| | | || || | || || ||||| |||||||| || || ||| || Sbjct 699 TTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGC 640 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || || || | || |||||||| | | | ||||| || ||| | ||| || Sbjct 639 AAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATC 580 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 || ||| | | || ||| | |||||| |||||| || | ||| | | ||| Sbjct 579 CTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTT 520 Query 16774 ATACATTTTCCATATGTCTTCGTA 16797 ||||||||||| || || | ||| Sbjct 519 GTACATTTTCCAGATATCATTGTA 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462397297024000