Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq10217 147 2e-30 >seq10217 Length=2370 Score = 147 bits (162), Expect = 2e-30 Identities = 438/668 (66%), Gaps = 17/668 (3%) Strand=Plus/Minus Query 19970 AAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTA--TTTGGA-ATGCAATCTCGAT 20026 ||||| | ||| |||| || ||||| ||||| ||| |||||| || ||| || Sbjct 1493 AAAAAGCTGATAGAACAGGTGTTGGAA--TTATCGGTAAATTTGGATATCAAAT---GAA 1439 Query 20027 AT---AACTTGAGAAATGAATTTCCCT-TATTAACTACGAAACGGGTATTTTGGAAAGGC 20082 || | |||||| | || |||||| | |||||||| ||| ||||| |||| ||| Sbjct 1438 ATTTGATCTTGAGGA--GAGTTTCCCAATTTTAACTACTAAAGATGTATTCTGGAGAGGT 1381 Query 20083 GTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAA 20142 || | ||||||| || | |||||| |||||||| || ||| | | | ||| || Sbjct 1380 GTAGCTGAAGAGCTAATCTGGTTTGTTAAAGGAGACACTAATGCAAAAAATCTTAGTGAT 1321 Query 20143 AAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTT 20202 || | | ||||| ||| | ||| || | | || ||| | | | ||| || Sbjct 1320 AAGAAAATAAAGATCTGGGATGGTAATGCTTCAAGATAGTTCTTAGATGGAATTGGCTTG 1261 Query 20203 GACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGA 20262 | | | | || |||| | || || || ||||| ||| ||||||||||||| ||| Sbjct 1260 AAAGAAAGAGAGGAATGGGACCTTGGGCCAGTCTATGGCTTTTAATGGAGACATTTCGGA 1201 Query 20263 GCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAAT 20322 |||| ||| | ||| | | ||||| | ||||| | |||||| || | Sbjct 1200 GCTGCATACGACACTATGCATTCTGATTATACTAATTAAGGATTCGATCAACTAGCTGAC 1141 Query 20323 GTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAAC 20382 || || |||| |||||| | || |||| ||||||||| | | |||||||||| Sbjct 1140 GTAATCAATTAAATTAAGAACAATCCAACTAGCAGAAGAATCCTGATGAGCGCCTGGAAT 1081 Query 20383 GCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTT 20442 || |||| | ||||||| | ||||| |||||||| || |||| |||||| Sbjct 1080 GCAGCAGATTTAAAGAAAATGGCTCTTCCTCCTTGTCATATATTAGCTTAATTCTACGTT 1021 Query 20443 ---GCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGT 20499 ||| | | || | || || || |||||| || |||| ||||||||| || ||| Sbjct 1020 ACCGCTGACTAAAAACTATCCTGCCAGATGTATTAAAGATCATGTGATATGGGTCTTGGT 961 Query 20500 GTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGAT 20559 ||||||||||||||||| || || | | | || | ||| | || | || | | Sbjct 960 GTTCCTTTCAATATTGCTAGCTACTCCTTATTGACTTGCATGCTGGCTTAAGTATGCGGT 901 Query 20560 TTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATA 20619 | || | ||||| || ||||| | | || ||||| ||| |||| |||||| | Sbjct 900 CTTAAGAGAGGTGAATTCATCCACGTCCTTGGTGACGCACATGTTTATAAAAATCATGTT 841 Query 20620 GAACCTTT 20627 |||||||| Sbjct 840 GAACCTTT 833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399087477308800