Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15602 150 2e-31 >seq15602 Length=1555 Score = 150 bits (166), Expect = 2e-31 Identities = 578/890 (65%), Gaps = 27/890 (3%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || || || |||| ||||| |||||||||||||||||||| ||| | || || | Sbjct 1346 TTCTGGTACTCACCGACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATG 1287 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAAC--ACTTTATCACAACCTAGTTCTAATA 14030 ||||| | ||||||||||| | ||| | | ||||| || ||||| | |||| Sbjct 1286 TCCATCCATTCAAATGGATTC-TCGACTTGATAGTACTTTGGTACT-CCTAGGGCAAATA 1229 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 | | ||| || |||| |||| || || ||| ||| | | | |||||||| || | Sbjct 1228 GAAGTCTGTCTGCAACGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCA 1169 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | || || | | | ||| || || ||| |||| || || ||| | Sbjct 1168 ACTCGACTGGTAGTGACTCACTTACGAACTCCAATTCAATAGTTACTGC---GTTGGAGA 1112 Query 14151 TAATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGT--TTAAAAATTAAACA 14205 ||||| || ||| || || || || |||| | ||||| || | | | ||| Sbjct 1111 TAATCTCAAGGATTCTCTCGTTGGA--GATTTTATTGTTGATGTGCTTGTAGAGGAGACA 1054 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||| ||||| || | || || ||||| ||| | ||| ||||| ||||| | || Sbjct 1053 CGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACC 994 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATA 14324 |||||| | || || || |||| ||| || |||| ||| ||| || || |||||||||| Sbjct 993 TGGCATAAGACCACGCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAATA 935 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 | |||||||| || || || |||| | || || | || || | | || | | Sbjct 934 TGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTC--TCCA-A 878 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttt-tAATAAAA-TCCATTGTTTCAATAGCATT 14442 ||||||| ||||| |||| |||||| || || | ||||| | ||| || Sbjct 877 TCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGG--ACAGCTTT 820 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATAC 14500 || | | ||| || |||| || | | ||| | || |||||||| | ||| Sbjct 819 GAAGAGAAATTCTTTTTCTT--GTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAA 762 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 ||||| ||| ||||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 761 GTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGC 702 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || | || | | | ||||| | ||||||||||||||||||||||| ||| ||| Sbjct 701 ACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCA 642 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 ||||| || || | | | |||||||||| | ||| | | ||||| | | |||| Sbjct 641 GCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAA 582 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 || | ||| ||| ||||| | ||| || ||||| || ||| | | | Sbjct 581 TCCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCT 522 Query 14741 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || |||||| ||| || || || ||| ||||| | | |||||||| Sbjct 521 TTGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482225978291200