Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6367 111 1e-19 seq55 96.9 3e-15 seq5287 95.1 9e-15 seq18108 86.0 5e-12 >seq6367 Length=732 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| | |||| |||||| |||||||||||||| |||||||| || | | Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||||||| | || || ||| |||| |||||||||||||| ||| Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | ||| || | | | || ||| ||||||| Sbjct 521 ATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACA 580 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| || || | || || ||||| || || || || || | ||||||| Sbjct 581 TCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTTT 631 >seq55 Length=1219 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| |||||| ||||| || ||||| ||||| ||||| | | ||| | Sbjct 1041 AGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTT 982 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | ||| || || || ||||||||||||||||||| || | |||||| Sbjct 981 CCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 922 Query 18228 TTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || | | | ||| |||||| | | ||| ||| || ||||| || | || Sbjct 921 TTGTC--CTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGG 864 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||| | || ||||| | || || || || ||||||||| Sbjct 863 TAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| || | || || ||||| || |||||||||||||||||| | ||| | Sbjct 585 AGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTG 526 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | ||| || || ||| ||||||||||||||||||| || | |||||| Sbjct 525 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 466 Query 18228 TTATC 18232 || || Sbjct 465 TTGTC 461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 813 AGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTG 754 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | |||||| || || | || |||||||||||||| || | |||||| Sbjct 753 CCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCC 694 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| || | |||||| | | ||| ||||||| |||||| || | |||| Sbjct 693 TTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTG 634 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||||| | || || || || |||| ||| Sbjct 633 ATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| || || ||||| || ||||| ||||||||||| Sbjct 366 CCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTG 307 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | || || | ||| || || || | || |||||||||||||| || Sbjct 306 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGG 247 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || || | |||||| | | ||| |||||| |||||| Sbjct 246 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACG 187 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | |||||| ||||||| || | || || || || |||||||| ||| Sbjct 186 TCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATTT 136 >seq5287 Length=1089 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| || || || |||||||| || ||||||||||| | Sbjct 411 CCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 352 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| || | || || || |||||||||| |||||||| || Sbjct 351 AGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGG 292 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | |||||| | | ||| ||||||| ||||| Sbjct 291 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACA 232 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || | || || || ||||| ||||| || |||| ||| Sbjct 231 TCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| ||| || || ||||| |||||||| ||||| || | Sbjct 639 CCTCCTCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAG 580 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||||||||| || || || | || ||||| | |||||| || Sbjct 579 AGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGG 520 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||||| | || || || | | ||| || || ||||| Sbjct 519 ATTCCCTCCTTGTCTTGAATTT-TAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAAC 461 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | |||||||| | || || || || || | ||| Sbjct 460 ATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 >seq18108 Length=1037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||||| | || | ||||| ||||||||||| || | || ||||| | Sbjct 405 CCGCCCCTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAG 346 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| || |||||||| ||| |||||||||| |||| || | || Sbjct 345 AGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGT 286 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| ||| ||| || || || | Sbjct 285 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGGACTCAAAAGTCTCGTTGGCTTCACAT 226 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| || | || || || | |||| |||||||||| | ||| Sbjct 225 TCAAGGGTAATTGTCTTTCCAGTGAGTGTTCTTACAAAAATCTACAT 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379252274620800