Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15602 190 2e-43 seq5287 113 4e-20 seq55 98.7 9e-16 seq18108 86.0 6e-12 >seq15602 Length=1555 Score = 190 bits (210), Expect = 2e-43 Identities = 525/796 (66%), Gaps = 23/796 (3%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||||||||| |||| ||||| |||||||| || | || || |||| || Sbjct 445 GAGCCACTTTTGGAAGAAAATCCAAACAGATTTGTTATCCTACCTATCAAATACAATGAT 504 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||||| ||||||||| | | || | || ||||| |||||| | || || Sbjct 505 ATCTGGAAAATGTACAAAGATCAAATGGCTGCATTCTGGACTTCAGAAGAAATTGATCTA 564 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 ||| ||| | | |||||||| ||||| || |||||| | |||||||| || Sbjct 565 GCTACTGATATTAAGGATTGGGAGAGACTCAATGACAACGAGAGACACTTTATTAAGCAT 624 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || || || || || || ||||| ||||| || ||||||| | ||||| Sbjct 625 GTTCTAGCCTTCTTTGCTGCTTCTGACGGTATAGTTAATGAAAATTTGGCTCAGAGATTC 684 Query 57750 T-CACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808 | ||| ||| | ||||| | ||||| ||||| || || ||||| || || || || Sbjct 685 TGCACT-GAAATCTAAGTGCCTGAGGCTAGATGTTTCTATGGATTCCAGATGATGATGGA 743 Query 57809 AAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGA 57868 ||| | || |||| ||||| || || || || || | | | ||| | || | Sbjct 744 GAACATCCACAGTGAAACTTATTCTCTTCTTATTGACACTTTAATTAGTGAC--CCACAA 801 Query 57869 GAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 |||| ||| || ||||| || || | | || || | | || || || || | Sbjct 802 GAAAA--AGAATTTCTCTTCAAAGCTGTCCACAATATACCAGTAGTAGCTAAAAAAGCTG 859 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | ||| || |||||||||| | | || || ||||||||||| || | || | Sbjct 860 ATTGGGCACTCAAATGGATTGGA---GAGACCGCTCAATTCGCCGAGAGACTTGTAGCCT 916 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 |||| || || || || ||||||||||| ||| ||| ||| |||| || ||| | ||| Sbjct 917 TCGCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGC-TCAATTTTCTGGCTAAAG 975 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 || || || || ||||| || || || || || || ||||| || | ||||| ||| Sbjct 976 AAGCGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAGAGACGAAGGT 1035 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA----CCGACGCG 58159 | || || ||||| ||||| || | ||| ||||| ||||||| || ||| | Sbjct 1036 ATGCACACCGATTTCGCGTGTCTCCTCTACAAGCACATCAACAATAAAATCTCCAACGAG 1095 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 || ||| | || |||||| || | || || | || ||| ||||| || | || Sbjct 1096 AGA----ATCCTTGAGATTATCTCCAACGCAGTAACTATTGAATTGGAGTTCGTAAGTGA 1151 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 | ||||| || | || ||||||||||| | | ||| ||||||| ||| Sbjct 1152 GTCACTACCAGTCGAGTTGATCGGTATGAACTCAAAACTCATGAGTCAGTACATCATGTT 1211 Query 58280 TGTTGCCGACAGACTT 58295 ||||| ||||||||| Sbjct 1212 CGTTGCAGACAGACTT 1227 >seq5287 Length=1089 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 |||||| |||| |||| ||||||||||| | || || || || || ||| | || |||| Sbjct 177 AATCAATCATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTG 236 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || || |||| | | |||| ||||| | || || |||||||| | || | Sbjct 237 AGCCATCTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCAC 296 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 |||| || ||| | || || |||||||| || |||| |||||| | || | | Sbjct 297 CCGATCAACAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTG 356 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || |||||||| ||||| ||| |||| || ||||| || || |||| Sbjct 357 ACTACAACATCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGGTA 413 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| ||||||||||||| || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || |||||| ||||| | || |||||||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || | || ||| | ||| | || |||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || |||| ||||| || ||||| |||| || ||||| || || ||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGGT 868 >seq55 Length=1219 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| | || ||||| ||||| || || || || || ||||| | |||||||| || || Sbjct 368 ATGTAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCA 427 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||| | || ||||| || Sbjct 428 GACACCATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 487 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || || | ||||| | || | ||||| || ||| Sbjct 488 CAAAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAAC 547 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||| ||| | || |||||||| || || |||| Sbjct 548 ATTCAAAAGGAGTCAACTCTCCATTTAGTCCTTAGACTCAGAGGTGGTA 596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || || ||| |||| ||||| || || Sbjct 824 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATCA 883 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| ||||| | || |||||||||||| | || ||||| || Sbjct 884 GATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCAA 943 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| || || | || || | ||| | || |||||| Sbjct 944 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAAC 1003 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| || || || ||||| |||| || ||||| || || ||| Sbjct 1004 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGGT 1051 >seq18108 Length=1037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || | || | || || || || ||||| | | ||| || || || Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||| | | ||| ||||| ||||| | || |||| Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||||||| |||||||||||| | || ||| || || | || |||||| Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAAC 814 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||||| ||| ||||| | ||||| |||||||| || || Sbjct 815 ATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGG 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445655849932800