Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15602 242 5e-59 seq7211 196 6e-45 seq11890 178 2e-39 >seq15602 Length=1555 Score = 242 bits (268), Expect = 5e-59 Identities = 413/596 (69%), Gaps = 2/596 (0%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||||||| ||||| ||| |||||||| ||| ||||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||| || ||||| || || || ||| || || |||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAA 937 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 || || || || || || ||||| | ||||||||| | | ||| | || || Sbjct 936 TATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAAT 877 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| || | |||||||| || || || ||| || || | | | || || || Sbjct 876 CCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGAA 817 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 |||| | | |||||| | || ||| |||| || || | |||| ||| |||| Sbjct 816 GAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTC 757 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || ||||| || || |||||| ||||| ||||||||||||||||| | | | Sbjct 756 ACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTA 697 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 | ||| || || |||| | || ||||||||||| ||||| || ||| || ||||| Sbjct 696 GATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAA 637 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCAT 34059 || || | ||||| || ||||| | | | |||| || || ||| | | |||||| | Sbjct 636 GAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCCT 578 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 | ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| | Sbjct 577 TAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGT 518 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 |||| |||||||| |||| |||| ||| || | ||||||||||| ||||||||| Sbjct 517 ACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTT 462 >seq7211 Length=2975 Score = 196 bits (216), Expect = 6e-45 Identities = 747/1146 (65%), Gaps = 40/1146 (3%) Strand=Plus/Plus Query 62763 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA 62822 || || || ||||||||||||||||||||||| ||||||||||| ||| || || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 62823 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT 62882 ||||| || |||||||| | ||| |||| ||||| || || ||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 62883 TTGACCACATCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTATTA-CAAACATG 62936 ||| |||| | | || | | ||| | | | | | || || |||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 62937 TTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATT 62996 || | ||| | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || ||||| |||||||| | || ||| || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 63117 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--TTTCGTATA 63174 |||| | || |||||| || | ||| | ||| | ||||||| Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGTC--TTTCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAA-ACATTGTCCAATCTAGGACATTCATCC 63233 ||| | | || || || ||||||||| | |||| |||| || ||||| | Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGTT-AATCCTGGGCATTCGTTG 1621 Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGA 63290 ||||||||||| | ||| ||| |||| |||| || | | |||| || | || ||| Sbjct 1622 GGACACATCAATGTCCAGTCT---TCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGA 1678 Query 63291 ATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 ||||| ||||| ||| || |||||||||| ||| | || || || || ||||||| | Sbjct 1679 ATCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCT 1737 Query 63350 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63409 || | ||||| | |||||| | |||||| ||||| | || | || | | | || Sbjct 1738 GAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACC 1797 Query 63410 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63469 | |||| ||||| ||||| | || || || |||| |||| |||| | | ||| Sbjct 1798 TTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCAT 1857 Query 63470 TGGAATAATACCGTTTGA-TATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGA 63527 || || | || ||||| ||| || || || || || | || || ||| | || Sbjct 1858 AGGTATCAATCCATTTGAGTAT-CCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 63528 -ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 | | || | ||| | ||| || || || || || ||||| | |||| | | | Sbjct 1917 TGTCTGAC--ACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCT 1974 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAA--AACAGCT 63643 || || ||| |||| || || || ||| || |||| ||||| |||| || | || Sbjct 1975 TAGAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT 2034 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||||| | | |||||| | |||||| | || || | |||||| || ||||| Sbjct 2035 ---CATTTAAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCA 2091 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTC 63762 | | | || || || || |||| |||||| |||| |||| | ||| ||||||| Sbjct 2092 AAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAATTC 2150 Query 63763 C--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT-TT 63819 | |||| ||| | ||| | |||||| || ||||| |||| |||||| | || || Sbjct 2151 CAATACT--GACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCATCTT 2207 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 | || | |||| | | |||| ||| | || |||||||| | ||| |||||| | Sbjct 2208 TTAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTGT 2267 Query 63880 CGTAAA 63885 |||||| Sbjct 2268 CGTAAA 2273 >seq11890 Length=3034 Score = 178 bits (196), Expect = 2e-39 Identities = 776/1200 (65%), Gaps = 42/1200 (4%) Strand=Plus/Plus Query 62687 ATAAATGGTTTCAAAGATCTTCTT-ATTTAGATCTTGTGCT-TCCGGGCTATCAAATGGA 62744 |||||| |||||||| || ||||| ||| | | | ||| || || ||||||||| Sbjct 1061 ATAAATTGTTTCAAAAAT-TTCTTGATTGAACTGATAGGCTCTCTCATCT-TCAAATGGA 1118 Query 62745 TAATTTAAGA-GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | ||| ||| | |||| || || |||| ||| | |||||| |||||||| |||||||| Sbjct 1119 -ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATG 1177 Query 62804 TCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 |||| |||| ||| ||| || || | | | |||||| ||||| ||| || ||| | | Sbjct 1178 TCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAATGATTCTGT 1236 Query 62863 TGAGATTTCTGACAATTACTTTGACC---ACATCCTTCAGTTTGAGAAAATCAAATCGCC 62919 | ||||| || || ||| || || | | ||||| | ||||||| | Sbjct 1237 TAAGATTCTTGGTAA---CTTAGAAAGTTACTTTATGAAGTTTCTCATAATCAAAGACTC 1293 Query 62920 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 ||| | ||| | | | || | || || ||||| ||||| || | |||| | Sbjct 1294 CATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTG 1353 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 | | ||||| || |||||| || |||||| || ||| || ||||| | ||| | Sbjct 1354 GAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCT 1413 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 ||| || ||| ||| ||| |||||||| ||| | |||||||| || |||| Sbjct 1414 TTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAA 1473 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATTATAGATTTGTATC-- 63156 | | | ||| ||||| | || ||| | | || ||||| || | ||| | | Sbjct 1474 TTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGATAGTC--TTTCTTCCAA 1530 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | | || ||| ||| |||||| || ||| ||||| ||||| ||| | | | Sbjct 1531 TACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGA 1590 Query 63217 ATC-TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | | | ||||| ||||| | | | ||| || |||| || | || | ||| Sbjct 1591 GGCCTTTGGC-TTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTC 1649 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTT 63335 || || ||||| |||| ||| ||||| | |||| |||||| | ||| | ||| || ||| Sbjct 1650 ATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTT 1709 Query 63336 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 || |||||| | || | ||||| | | | ||||| |||||| || || ||||| Sbjct 1710 CCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAG 1769 Query 63396 ATGGCCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTG 63449 || || | ||| || || | ||||| || || || | |||||||| || Sbjct 1770 ATAGCGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTT 1823 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 | ||| ||||||| | ||| |||| || || ||||| ||||| || || ||| Sbjct 1824 TCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATG 1883 Query 63510 TAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 || | || |||| | ||||| || | || || | ||| || || | ||||| Sbjct 1884 TAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAA 1943 Query 63570 ATTAATGCGCATCGTT-TTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 || || || | |||| |||| || ||||| || || | || ||||| |||| Sbjct 1944 ATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCA 2001 Query 63628 TAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 | | || ||||||||| ||||| ||| | | || || || || || | ||||| Sbjct 2002 TTAAAAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCGTTGAAAAGAGTAGG 2059 Query 63686 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63745 | || || || |||||| | ||| | || || || |||||||| || | || || Sbjct 2060 GGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAGCATCAAT 2119 Query 63746 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 ||| || || || ||||||| || | | | ||| ||||| ||||||||||| || Sbjct 2120 ATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAACGAT 2179 Query 63806 TTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 || || | |||||| | || | | ||| | ||| ||| | || || || | ||| Sbjct 2180 CTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAATCGTA 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629661405235200