Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7211 215 5e-51 seq15602 152 5e-32 >seq7211 Length=2975 Score = 215 bits (238), Expect = 5e-51 Identities = 989/1540 (64%), Gaps = 53/1540 (3%) Strand=Plus/Plus Query 37125 GTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGT 37184 |||||| |||||| ||| ||||| | || ||||||||||| || | ||| ||| Sbjct 754 GTGTGGGTTTACACAAACAAATTCTCCTGCTAGAACTCTTCTTGTGTAAACATTAGAAGT 813 Query 37185 ATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 || || |||| || |||||||| | || || | ||||| || ||||| ||||| || Sbjct 814 GTACGGCTCAAAGGTTTCATTATTTCCCAAGATCTATGATGTGGAAGCAGTTGGCATAGG 873 Query 37245 TGCTATTAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTCTCTTTTTTAGTTCATTCC 37303 || || || || ||||| ||| ||| | || | ||| | || | ||| | || Sbjct 874 GGCAATGAGTAGAGAGTTTCTAGCTCCGTGTTTCATCACATCTTATCTTAATTTC-TCCC 932 Query 37304 AATCCCATAAATCTGT---TGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTAC 37360 |||| || ||||| ||| ||||| ||| | ||| ||| ||||| ||| | Sbjct 933 AATCGTATCTATCTGAGCATGGCTTCTTATCCCAAAGGTCAAATT--AGAAT---TTTCC 987 Query 37361 TCGC-----TGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCA 37415 | | ||| ||| | | | |||||||||||||| | | ||| ||| || Sbjct 988 TTGGGATAATGGGGAACCCTAGAAAGTCTCATAAGGTCCCTCGGCCATTGCTTATTC-CA 1046 Query 37416 ACTA-GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTG 37474 | | ||| | || |||| ||| || ||||| ||||| || ||| | | | | Sbjct 1047 TTGATGCTTCCATTGAAGCATGATAGATGGTTTCAAAAATAAGTTCATTAAGTCTGAGAG 1106 Query 37475 CTTCTTCG---CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 | || | || ||||||| ||| || || |||| || || || |||| Sbjct 1107 C--CTGAGGATCT-TCGAATGGGATTTTCAACAACTGAAGGGCATCTGCGAATCCTTGAA 1163 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAA 37590 |||| ||||| || ||||||||| | ||| || | | | | ||| | ||||| Sbjct 1164 CACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA-GCTTCAGGGATAGGATAG 1222 Query 37591 TAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAA 37649 | |||| |||| || || || |||||||| || | | | || || | || | | || Sbjct 1223 TGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTCTTGGTTACATAGTGT-AA 1281 Query 37650 CTTGTCGAACATAAATACGTTA------TTATTAACAAATTTACTCAACGAAATAGATCC 37703 ||| || | | | | ||| ||| |||||||| || | | | ||||| | Sbjct 1282 CTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTATTGAGTGCTATAGAAGC 1341 Query 37704 TAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATT 37763 || ||||| ||||||| ||| ||| | || |||| | || || || ||||| ||||| Sbjct 1342 AAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACGATTTCAGTACAAAGATT 1401 Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823 ||| | || || | ||| |||||| |||||| | ||||||| |||||| || Sbjct 1402 CGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTGTTACAAGTATCTTTGTA 1461 Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883 || ||||| || || || ||| | || | || | ||| | |||||| | ||| Sbjct 1462 CAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATCTAGGTCCATAGCCATCT 1521 Query 37884 TGCTTTAACGATCG-CTTTAAtttttttCTTTG--TTTCGTATTCTATATATAATTTGTT 37940 || || ||||| |||| | | || ||||||| || ||| | ||| | Sbjct 1522 AGCCTT---GATCGTCTTTCTTCCTCGTCCGGAAATTTCGTACTCCTCATAAAGTTTATC 1578 Query 37941 AAAATCATTCCCCCATACATCGCAT-AATCCTGGACATTCGCATGGACACATTAGAGACC 37999 ||| || | ||||| |||| | |||||||| |||||| |||||||| | | || Sbjct 1579 AAATTCCTCTCCCCA-ACATGTTGTTAATCCTGGGCATTCGTTGGGACACATCAATGTCC 1637 Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATA 38059 | ||||||| || || || | | ||| ||||| || || | ||| | ||| || | Sbjct 1638 AGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAATCCAGAGAGCATAGAACA 1697 Query 38060 AATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATA 38119 |||| | | ||| | ||||| || || ||||||||| | || || ||| | | Sbjct 1698 GATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTGAGTTGAAGGAAGTCGTAAA 1757 Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCT 38179 |||| || ||||||||||| | ||| | | | || ||| |||||| | ||||| | Sbjct 1758 TATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCTTTTCTTTTGCCGCCTCCTT 1817 Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239 ||| || ||| || | |||| |||| | | ||| |||||||| | ||||| || | Sbjct 1818 GATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATAGGTATCAATCCATTTGAGT 1877 Query 38240 TGCCGTTTATAC--CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCC 38297 |||||| | | | || || ||| || || | | | || | || | || Sbjct 1878 ATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGATGTCTGAC--ACTGAGACACC 1935 Query 38298 TATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTC 38357 || || || ||| ||||| || | ||| || | ||| || ||||| ||||| || Sbjct 1936 AATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTTAGAGTCTCAAAGATACCGTC 1995 Query 38358 TATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCC 38417 || || || || || | || || || ||| | ||||| |||| ||||||||| Sbjct 1996 AATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACTCATTTAAGGCTTTGGAGTTCC 2055 Query 38418 GGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT--AATTATAT 38475 | ||||| | ||| || | || || ||||||| | ||| || ||| |||| Sbjct 2056 AGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCA--AAGCTGACTCATTAAATCATAT 2113 Query 38476 GTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATA 38535 ||||| | | |||| ||| | |||||| || | | || ||||| ||||| Sbjct 2114 GTTTCAAAAGCTGATTCTAGATCCTCCTTGTGAATTCCAATACTGACTCTCATCAGCATG 2173 Query 38536 TGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGATACGATTTTTCTAATG 38593 ||||||||||| || |||||||| || ||| ||||| ||||| | | | || | | Sbjct 2174 TGTTGTGGTCTCTCAATTATTTTGGATCCATCT-TTTAA-AAGATAGGCTCTCTCCAGGG 2231 Query 38594 TTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || | | |||||||||| || || ||||| ||||| Sbjct 2232 TTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTGTCGTA 2271 >seq15602 Length=1555 Score = 152 bits (168), Expect = 5e-32 Identities = 396/592 (67%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 |||||| ||||| || | |||||||||||| || | |||||| || ||||| | Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGA 11747 || ||||| | || || || |||| ||| || || | |||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGA 938 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGA 11805 |||| ||||| |||||||| || ||||| | ||| || | || | | || || | Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCG-GTCTCTCCA 879 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| |||||||||||||| || ||| | || | | | ||| || Sbjct 878 -ATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTT 820 Query 11866 AAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || | ||| | ||||||| || || | | || || || | | | ||| Sbjct 819 GAAGAGAAATTC--TTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAA 762 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 |||| || || || ||||| || || |||||||||||||||| ||||| | Sbjct 761 GTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGG- 703 Query 11984 CACTGTACATCCACAT--AAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 |||| || || | | ||||| | || ||||| ||||| || ||||| ||| || Sbjct 702 CACT-TAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAG 644 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 ||||| || ||||| | ||| || ||||||| | | |||| | | | | | | |||| Sbjct 643 CAGCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCC 584 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 |||| | | ||| | | || ||| | |||||| ||||| || |||| | | Sbjct 583 AATCCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGAT 524 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||| ||||||||||||||||||| || || ||||| | ||||| || || Sbjct 523 CTTTGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468408605849600