Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15602 235 7e-57 seq11890 181 1e-40 seq7211 181 1e-40 >seq15602 Length=1555 Score = 235 bits (260), Expect = 7e-57 Identities = 412/597 (69%), Gaps = 2/597 (0%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||||||| ||| | ||| |||||||| ||| ||||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||| || |||||||| || ||||| || || || ||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | || || || || || || ||||| | ||||||||| | | || | || | Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAA 878 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| || | |||||||| || || || ||| || || | | | ||| || | Sbjct 877 TCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGA 818 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 ||||| | | |||||| | || ||| | || ||||| | |||| ||| ||| Sbjct 817 AGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTT 758 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 | || ||||| || || ||| || ||||| ||||||||||||||||| | | | Sbjct 757 CACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTT 698 Query 36516 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 | ||| || || |||| | || ||||||||||| ||||| |||||| || |||| Sbjct 697 AGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAA 638 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCAT 36635 | || || | ||||| || ||||| | | | ||||| | ||| | | |||||| | Sbjct 637 AGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCCT 578 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 | ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| | Sbjct 577 TAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGT 518 Query 36696 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 |||| |||||||| |||| |||| || || | ||||||||||| ||| |||||| Sbjct 517 ACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTT 461 >seq11890 Length=3034 Score = 181 bits (200), Expect = 1e-40 Identities = 740/1144 (65%), Gaps = 28/1144 (2%) Strand=Plus/Plus Query 65529 TCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 65587 ||||||||| | ||| ||| | |||| || || |||| ||| | |||||| |||||||| Sbjct 1110 TCAAATGGA-ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGAT 1168 Query 65588 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 65646 |||||||||||| |||| ||| ||| || || | | | |||||| ||||| ||| | Sbjct 1169 TGGTCTATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAA 1227 Query 65647 TAATTTTATTGAGATTTCTGACAATTACTTTGACC---ACATCCTTCAGTTTGAGAAAAT 65703 | ||| | || ||||| || || ||| || || | | ||||| | ||| Sbjct 1228 TGATTCTGTTAAGATTCTTGGTAA---CTTAGAAAGTTACTTTATGAAGTTTCTCATAAT 1284 Query 65704 CAAATCGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 65763 |||| ||| | ||| | | | || | || || ||||| || || || | Sbjct 1285 CAAAGACTCCATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAA 1344 Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823 |||| | | | ||||| || |||||| || |||||| || ||| || |||| Sbjct 1345 TTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTC 1404 Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883 | | ||| | ||| || ||| ||| ||| |||||||| ||| | ||||||| Sbjct 1405 CAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTAC 1464 Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATTATAGAT 65942 | || ||||| | | ||| ||||| | || ||| | | || ||||| || | | Sbjct 1465 CTGTCTCAATTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGATAGTC--T 1521 Query 65943 TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 66000 || | | | || ||| ||| ||||| || ||| ||||| ||||| || Sbjct 1522 TTCTTCCAATACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAA 1581 Query 66001 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 66060 | | | | || ||||| ||||| | | | ||| || |||| || | | Sbjct 1582 CTTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTA 1641 Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTT 66120 | | ||||| || ||||| |||| ||| ||||| | ||||||||||| | ||| | || Sbjct 1642 CCCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATT 1701 Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180 | || ||||| |||||| | || | ||||| | | | |||| |||||| || | Sbjct 1702 CTTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCT 1761 Query 66181 CCAAGTATATGGC-CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 | ||||| || || || | || | ||| || || || || | |||||||| Sbjct 1762 CTAAGTAGATAGCGAATGAACCCTTTCTCTTT-CCACCACCTTGGTCAACATATCTAGCA 1820 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGTCCCGGA 66298 || | ||| ||||||| | ||| |||| || ||||| || ||| ||||| || || Sbjct 1821 GTTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGT-CCATTAGTTCCCTT 1879 Query 66299 GATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 66358 ||| || || || | || | ||||| || | || || | ||| || || | || Sbjct 1880 GATGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTT 1939 Query 66359 AGAGATTAATGCGCATCGTT-TTAA-CGTATCATAGATGCCCTCTATACTATCATCCATC 66416 ||| || || ||| |||| |||| |||||||| || || | ||| |||||| || Sbjct 1940 AGAAATCAA--AGCAACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTC 1997 Query 66417 ATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATTAAATAAGG 66474 || | | || ||||||||| |||| |||| | || || || || || | | Sbjct 1998 ATCATTAAAAGGAAACAGCTACTCATTTATGGTTTTG--GGGTACCAGCGTTGAAAAGAG 2055 Query 66475 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 66534 |||| | || || || |||||| | ||| | || || || |||||||| || | | Sbjct 2056 TAGGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAGCAT 2115 Query 66535 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594 | ||||| || || || ||||||| || | | | ||| ||||| |||||||||| Sbjct 2116 CAATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAA 2175 Query 66595 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 ||||||| || | |||||| | || | | ||| | ||| ||| | || || || | Sbjct 2176 CGATCTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAAT 2235 Query 66655 TGTA 66658 ||| Sbjct 2236 CGTA 2239 >seq7211 Length=2975 Score = 181 bits (200), Expect = 1e-40 Identities = 743/1148 (65%), Gaps = 44/1148 (4%) Strand=Plus/Plus Query 65556 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA 65615 || ||||| ||||||||||||||||||||||| ||||||||||| ||| || || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 65616 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT 65675 ||||| || |||||||| | ||| |||| ||||| || || ||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 65676 TTGACCACATCCTTCAGTTTGAGAAAATCA-AATC-----GCTCATCTATTACAAACATG 65729 ||| |||| | | || | | ||| | || ||| | || ||||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 65730 TTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 65789 || | ||| | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || ||||| |||||||| | || || || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 65910 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATA 65967 |||| | || |||||| || | ||| | ||| | ||||||| Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGT--CTTTCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATCC 66026 ||| | | || || || ||||||||| | |||| ||||| || ||||| | Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGT-TAATCCTGGGCATTCGTTG 1621 Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGA 66083 ||||||||||| | ||| ||| |||| |||| || | | |||| || | || ||| Sbjct 1622 GGACACATCAATGTCCAGTCT---TCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGA 1678 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| ||||| ||| || | |||||| | ||| | || || || || ||||||| | Sbjct 1679 ATCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCT 1737 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 || | ||||| | |||||| |||||| ||||| | || | || | | | || Sbjct 1738 GAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACC 1797 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 | |||| ||||| ||||| | || || || |||| |||| |||| | | ||| Sbjct 1798 TTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCAT 1857 Query 66263 TGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAA 66321 || || | ||||| || ||| || || || || || || || ||| | | Sbjct 1858 AGGTATCAATCCATTTGA-GTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 66322 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 | | | ||| | ||| || || || || || ||||| | |||| | | ||| Sbjct 1917 TGTCTGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTTA 1976 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AACAGCTAG 66438 || ||| |||| || || || ||| || |||| ||||| |||| || | || Sbjct 1977 GAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT-- 2034 Query 66439 ACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||| | | || |||||| | |||||| | || || | |||||| || ||| Sbjct 2035 -CATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAAC 2089 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 66553 || | | | || || || || |||| |||||| |||| |||| | ||| ||||| Sbjct 2090 CAAAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAAT 2148 Query 66554 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT- 66610 ||| |||| ||| | ||| | |||||| || ||||| |||| || ||| | || Sbjct 2149 TCCAATACT--GACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCATC 2205 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 ||| || | |||| | | |||| ||| | || |||||||| | ||| |||||| Sbjct 2206 TTTTAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCT 2265 Query 66671 TTCGTAAA 66678 ||||||| Sbjct 2266 GTCGTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658009573145600