Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq55 105 7e-18 seq18108 89.7 5e-13 >seq55 Length=1219 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | |||||||| ||||| |||||||| || || | || || |||||| Sbjct 805 AACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTC 746 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| ||||| ||||| | || || | ||| ||||||||||| || ||||| || || Sbjct 745 GAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTG 686 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | ||| | ||||| | ||||| || || | ||| | ||||| Sbjct 685 GATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTT 626 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || || ||||| |||| |||| Sbjct 625 ACCGGTAAGGGTCTTGACGAAGATTTACATA 595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || || | || || ||| ||||| || || ||| Sbjct 336 GTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCA 277 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || || | ||| |||||||| || || ||||||||||| ||| || || Sbjct 276 GCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTG 217 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | |||||| || || | ||| | || ||||| || | || Sbjct 216 ACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTC 157 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 156 TTAACGAAGATTTGCATA 139 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | || ||||| ||||||||||| || ||||| | || || ||||| Sbjct 576 ACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCTTCA 517 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || || |||||| |||| || | ||| |||||||| || || ||||| ||||| || Sbjct 516 AGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTC-TTG 458 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | || | | || | ||||| | ||||| || |||| || | ||||| Sbjct 457 AATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGTCTT 398 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || | || || ||||| || | |||| || Sbjct 397 TCCAGTGAGGGTCTTGACGAAGATCTACATACCT 364 >seq18108 Length=1037 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| ||||| || || ||||||| |||||||| || | || || ||| || Sbjct 843 ACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGATAACGTTCTACCGTCATCA 784 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| |||||| | || || | || ||||| || || ||||||||||| || Sbjct 783 AGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGGAATACCTTCTTTGTC-TTG 725 Query 139676 ATTTTTTGTTTTAGCTG-TTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 | ||||||| | | || || || || | || | |||||||| ||| || | |||| Sbjct 724 A-ATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCACGGCAAGAGTGATAGTCT 666 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| || ||| | || || ||||||||| Sbjct 665 TACCGGTTAAGGTTCTAACAAAGATTTGCATA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495940976128000