Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15602 269 4e-67 seq11890 269 4e-67 seq7211 223 5e-53 >seq15602 Length=1555 Score = 269 bits (298), Expect = 4e-67 Identities = 421/597 (71%), Gaps = 4/597 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||||||| ||||| ||| |||||||| ||| | ||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || |||||||| || ||||| || || || ||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGT 50136 | || || || || || || ||||| ||||||||||| | || || ||| | || Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCG-AATTGAGCGGTCTCTCCA 879 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || | |||||||| || || || ||| || || | | | || || Sbjct 878 ATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTG 819 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 |||||| | | |||||| | || ||| |||| || || | |||| ||| || Sbjct 818 AAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTT 759 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || ||||| || || |||||| ||||| ||||||||||||||||| | | Sbjct 758 TCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACT 699 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | | ||| || || |||| | ||| ||||||||||| ||||| |||||| || ||| Sbjct 698 TAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCA 639 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 || || || | ||||| || ||||| ||| | |||||| | ||| | | |||||| Sbjct 638 AAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCC 579 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| Sbjct 578 TTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTG 519 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||| |||||||| |||| |||| ||| || | ||||||||||| ||||||||| Sbjct 518 TACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTT 462 >seq11890 Length=3034 Score = 269 bits (298), Expect = 4e-67 Identities = 1197/1856 (64%), Gaps = 52/1856 (3%) Strand=Plus/Plus Query 78711 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 78770 || ||| ||||| | ||||| | | || ||| | || | ||||| || || || Sbjct 407 GTTCAAGGTGAACTTAATGGCATCTCTGGCTGGTCTTGTTCTAAGATAATATTGACCAGT 466 Query 78771 TTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 78830 |||||| || ||| | |||||||| ||| | ||||||| | | | | || Sbjct 467 TTTTAGTCCCTATTGCCAAGCATAGAAATGAGCACTACTAAGTTTGGTAAAGGTAGCTTC 526 Query 78831 TGCTATATGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCA 78889 || |||| || || | || | | ||||||| |||||| | | | || || |||| Sbjct 527 AGCCATATATATGTTTA-AGCTCTAACTTTGACAGATGAAAGGTGCTCTAGCTCTGGCCA 585 Query 78890 TTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTT 78949 || |||| | ||||| || |||||||||||||||||| || | || | |||| Sbjct 586 AATTAATGAGCTGCTTTTATGAAATTTCCCAAATAGTTTTGTAGAGATTTTTCAATTCTT 645 Query 78950 CTGGAAGGTTTGTATTCTGA-ATGGATCCACCATCT---GCCATAATCCTATTCTTGATC 79005 || | | | || |||| || | | ||||| |||| | | ||| || | Sbjct 646 GAGGGATTTCTTTAATCTGTTATACA-CTACCATTGTGAGCCACCAACTGATTACGGACC 704 Query 79006 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT-ACTTG 79064 || ||||||||||| || | | | | | | |||||| | ||| ||||| || || | Sbjct 705 TCATCATTCCATAAGTTAATATTGATGAGATCTCTAACCAAATGAGGATTGACGCACACG 764 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 || ||| || | | |||||| | || || || || | || ||||| || | ||| Sbjct 765 AA-TTCACCGGCAAGTACTCTTCTGGTATAGATGTTTGTTGTGTATGGCTCGAAACTTTC 823 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||||| || || ||||| | |||||| || ||||||||||| || ||||| | ||| Sbjct 824 GTTATTACCTAAGATTTGGGAAGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAATT 883 Query 79185 TCTAAGACCGTA--TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 ||| |||| | |||| || | | || | | |||||||| | || | Sbjct 884 TCTTGCACCGAACTTGAT--GACATCAGCTCTCAATTTATCCCAATCGTATCTATTTGTT 941 Query 79243 GGGACAA---CATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCTGT 79298 || | ||||||||||||||||||| | | ||| | ||| | | | ||||||| Sbjct 942 GGAAGTTTTTCATTCCAAAGATCATATTGGAATAGACCCTGACTTAATGGA-GATCCTGG 1000 Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 | | | || ||||| || || || ||| | ||| ||| | || | | | | | Sbjct 1001 GAAAGATTGATAAGCCCCCTCTACTTTGGCAAGTTCCATACTTGATTCCATAGATGCATG 1060 Query 79359 ATAAATGGTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCT-TCTAGGCTATCAAATGGA 79416 |||||| ||||| ||||| ||||| ||||| | | ||| ||| || ||||||||| Sbjct 1061 ATAAATTGTTTCAAAAAT-TTCTTGATTGAACTGATAGGCTCTCTCATCT-TCAAATGGA 1118 Query 79417 TAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | ||| ||| | |||| || || |||| ||| | |||||| |||||||| |||||||| Sbjct 1119 -ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATG 1177 Query 79476 TCTCTTATTAGAAATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 |||| |||| || ||| || || | | | |||||| ||||| ||| || ||| | | Sbjct 1178 TCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAATGATTCTGT 1236 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTA----GTTTGAGAAAATCAAATCGT 79590 | |||||| || | |||| || | | ||||| |||| | ||||||| | Sbjct 1237 TAAGATTCTTGG---TAACTTAGAA-AGTTACTTTATGAAGTTTCTCATAATCAAAGACT 1292 Query 79591 CCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 |||| | ||| | | | | | || || ||||| || || || | |||| Sbjct 1293 CCATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCT 1352 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | | ||||| || || ||| || || ||| || ||| || ||||| | ||| Sbjct 1353 GGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTC 1412 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 | ||| || ||| ||| ||| |||||||| ||| | |||||||| || ||| Sbjct 1413 TTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCA 1472 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATTATAGACTTGTATCT 79829 || | | ||| ||||| | || ||| | | || ||||| || || ||| || Sbjct 1473 ATTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGAT---AGTCTTTCTTCC 1528 Query 79830 CTTTTCTCT---TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | || ||| |||| |||||||| ||| ||||| ||||| ||| || | Sbjct 1529 AATACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATA 1588 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | || ||| | ||||| | | | ||| || || | || |||| | || Sbjct 1589 GAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTT 1648 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || ||||| |||| ||| ||||| | |||| |||||| | ||| | || || || Sbjct 1649 CATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTT 1708 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 ||| |||||| | || | ||||| | | | ||||| |||||| || || ||||| Sbjct 1709 TCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTA 1768 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 || || | ||| || || || || || || | |||||||| || | ||| Sbjct 1769 GATAGCGAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATT 1828 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGTCCCGGAGATATAGC 80185 ||||||| | ||| |||| || ||||| || ||| ||||| || || ||| || | Sbjct 1829 GAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGT-CCATTAGTTCCCTTGATGTAAC 1887 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 | || |||| | ||||| || | || || | ||| || || | ||||| || | Sbjct 1888 TACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCA 1947 Query 80246 ATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | || | |||| |||| |||||||| || || | || ||||| |||| | | Sbjct 1948 AAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAA 2005 Query 80304 TAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 80361 || ||||||||| ||||| ||| | || || || || || | ||||| | Sbjct 2006 AAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCGTTGAAAAGAGTAGGGGTT 2063 Query 80362 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 80421 || || || |||||| | ||| || || || || |||||||| || | || ||||| Sbjct 2064 GCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAGCATCAATATCA 2123 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || || || ||||| | || | | | ||| ||||| ||||||||||||||||| Sbjct 2124 GTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAACGATCTTT 2183 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 ||| | |||||| | || | | ||| | ||| ||| | || || || | ||| Sbjct 2184 CCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAATCGTA 2239 >seq7211 Length=2975 Score = 223 bits (246), Expect = 5e-53 Identities = 752/1147 (66%), Gaps = 42/1147 (4%) Strand=Plus/Plus Query 79435 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA 79494 || ||||| ||||||||||||||||||||||| ||||||||||| ||| ||| || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 79495 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACT 79554 ||||| || |||||||| | ||| |||| ||||| || || |||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 79555 TTGACCACATCCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTATTA-CAAACATG 79608 ||| |||| | || || | | ||| | | ||| | || || |||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 79609 TTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 79668 || | || | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 |||||||| || || || | || || || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC----TTTCGTA 79844 |||| | || |||||| || | ||| || || || ||||||| Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGT---CTTTCTTC-CTCGTCCGGAAATTTCGTA 1560 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT-AATCCAGGACATTCGT 79903 | ||| | | || || || ||||||||| ||| | | ||||| || ||||||| Sbjct 1561 CTCCTCATAAAGTTTATCAAATTCCTCTCCCCAA-CATGTTGTTAATCCTGGGCATTCGT 1619 Query 79904 CAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAA 79963 ||||||||||| | ||| ||| ||| | || || | | |||| || | || |||| Sbjct 1620 TGGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAA 1679 Query 79964 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 |||| ||||| ||| || |||||||| | ||| | ||| || || || ||||||| | Sbjct 1680 TCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTG 1738 Query 80023 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 80082 || | ||||| | |||||| | |||||| ||||| | || | || | | | || Sbjct 1739 AGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCT 1798 Query 80083 GGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 80142 || |||| ||||| ||||| | || || || |||| |||| |||| | | ||| Sbjct 1799 TTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATA 1858 Query 80143 GGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGA- 80199 || || | ||||| || ||| || || || || || | || || ||| | || Sbjct 1859 GGTATCAATCCATTTGA-GTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGAT 1917 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 | | || | ||| | ||| || || || || || ||||| | |||| | | || Sbjct 1918 GTCTGAC--ACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTT 1975 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAA--AACAGCTA 80316 | || ||| |||| || || || ||| || |||| ||||| |||| || | || Sbjct 1976 AGAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT- 2034 Query 80317 GACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 ||||| | | || |||||| | |||||| | || || | |||||| || || Sbjct 2035 --CATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAA 2088 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAA 80431 ||| | | || || || || || |||| ||||||||||| |||| | ||| |||| Sbjct 2089 CCAAAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAA 2147 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT-T 80490 |||| | ||| | ||| | |||||| || ||||| |||| || ||| || || | Sbjct 2148 TTCCAATACTGACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCATCT 2206 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 || || | || | | | |||| ||| | || |||||||| | ||| |||||| Sbjct 2207 TTTAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTG 2266 Query 80551 TCGTAAA 80557 ||||||| Sbjct 2267 TCGTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718090669337600