Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15602 149 6e-31 >seq15602 Length=1555 Score = 149 bits (164), Expect = 6e-31 Identities = 575/887 (65%), Gaps = 21/887 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || || || |||| ||||| |||||||||||||||||||| ||| | || || | Sbjct 1346 TTCTGGTACTCACCGACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATG 1287 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAAC--ACTTTATCACAACCTAGTTCTAATA 13698 ||||| | ||||||||||| | ||| | | ||||| || ||||| | |||| Sbjct 1286 TCCATCCATTCAAATGGATTC-TCGACTTGATAGTACTTTGGTACT-CCTAGGGCAAATA 1229 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | | ||| || |||| ||| || || ||| ||| | | | |||||||| || | Sbjct 1228 GAAGTCTGTCTGCAACGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCA 1169 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | || || | | | ||| || || ||| |||| || || | |||| Sbjct 1168 ACTCGACTGGTAGTGACTCACTTACGAACTCCAATTCAATAGTTACTGCGTTGGAGATAA 1109 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGT--TTAAAAATTAAACACGC 13876 | || |||| || || || |||| | ||||| || | | | |||||| Sbjct 1108 TCTCAAGGATTCTCTCGTTGGA--GATTTTATTGTTGATGTGCTTGTAGAGGAGACACGC 1051 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||| || | || || ||||| ||| | ||| ||||| ||||| | ||||| Sbjct 1050 GAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGG 991 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTC 13995 ||| | || || || |||| ||| || |||| |||| || || || ||||||||||| | Sbjct 990 CATAAGACCACGCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAATATGC 932 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 ||||||| || || || |||| | || || | || || | | || | |||| Sbjct 931 CCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTC--TCCA-ATCC 875 Query 14056 ATTTTCTAGCCCATTCAGAtttttttt-tAATAAAA-TCCATTGTTTCAATAGCATTAAA 14113 |||| ||||| |||| |||||| || || | ||||| | ||| || || Sbjct 874 ATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGG--ACAGCTTTGAA 817 Query 14114 TAAATATTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATACATT 14171 | | |||| || |||| || | | ||| | || |||||||| | ||| || Sbjct 816 GAGAAATTCTTTTTCTT--GTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTT 759 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| ||| ||||| ||||| ||||| || ||||| || |||||||| || | | | Sbjct 758 TCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACT 699 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | | ||| | | | ||||| | ||||||||||||||||||||||| ||| ||| ||| Sbjct 698 TAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCA 639 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || || || | | | |||||||||| | ||| | | |||||| | | |||||| Sbjct 638 AAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCC 579 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| ||| ||||| | ||| || ||||| || ||| | | ||| Sbjct 578 TTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTG 519 Query 14412 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 |||||| ||| || || || ||| ||||| | | |||||||| Sbjct 518 TACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479609027456000