Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15602 136 4e-27 >seq15602 Length=1555 Score = 136 bits (150), Expect = 4e-27 Identities = 592/917 (65%), Gaps = 27/917 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || || || |||| ||||| |||||||| ||||||||||| ||| | || || | Sbjct 1346 TTCTGGTACTCACCGACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATG 1287 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAAC--ACTTTATCACAACCTAGTTCTAATA 13486 ||||| | || |||||||| | ||| | | ||||| || ||||| | |||| Sbjct 1286 TCCATCCATTCAAATGGATTC-TCGACTTGATAGTACTTTGGTACT-CCTAGGGCAAATA 1229 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | ||| || |||| ||| || || ||| ||| | | | |||||||| || | Sbjct 1228 GAAGTCTGTCTGCAACGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCA 1169 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | || || | | | | ||| || || ||| |||| || || ||| | Sbjct 1168 ACTCGACTGGTAGTGACTCACTTACGAACTCCAATTCAATAGTTACTGC---GTTGGAGA 1112 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGAT--ATTTTAGATGT--TTAAAAATTAAACAC 13662 |||||| || || || | | |||| | ||| | ||||| || | | | |||| Sbjct 1111 TAATCTCAAGGAT-TCTCTCGTTGGAGATTTTATTGTTGATGTGCTTGTAGAGGAGACAC 1053 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || ||||| || | || || ||||| ||| | ||| ||||| ||||| | ||| Sbjct 1052 GCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCT 993 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATAT 13781 ||||| | || || || |||| ||| || |||| ||| ||| || || ||||||||||| Sbjct 992 GGCATAAGACCACGCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAATAT 934 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 |||||||| || || || |||| |||| || | || || | | | || Sbjct 933 GCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTC---TCCAAT 877 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttt-tAATAAAA-TCCATTGTTTCGATTGCATTG 13899 |||||| ||||| |||| |||||| || || | ||||| || || ||| Sbjct 876 CCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTG--GACAGCTTTG 819 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATACA 13957 || | | ||| || |||| || | | ||| | || |||||||| | ||| Sbjct 818 AAGAGAAATTCTTTTTCTT--GTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAG 761 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 ||||| ||| ||||| || || ||||| || ||||| ||||||||||| || | | Sbjct 760 TTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCA 701 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || | || | | | ||||| | ||||| ||||||||||| ||||| ||| ||| | Sbjct 700 CTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAG 641 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| || || | | | |||||||||| | ||| | | |||||| | | ||||| Sbjct 640 CAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAAT 581 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | | ||| ||| ||||| | ||| || ||||| || ||| | | || Sbjct 580 CCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTT 521 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTT 14256 | |||||| ||| || || || ||| ||||| | | |||||||| | ||| || Sbjct 520 TGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGAT-TT 462 Query 14257 TCTTTAAGAATTGGCTC 14273 |||| | || |||||| Sbjct 461 TCTTCCAAAAGTGGCTC 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478470109977600