Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15602 230 3e-55 seq7211 206 4e-48 seq11890 196 6e-45 >seq15602 Length=1555 Score = 230 bits (254), Expect = 3e-55 Identities = 410/596 (69%), Gaps = 2/596 (0%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||||||| ||||| ||| || ||||| ||| ||||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || |||||||| || ||||| || || || ||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 | || || || || || || ||||| | ||||||||| | | || | || | Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAA 878 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||| || | |||||||| || || || ||| || || | | | || || | Sbjct 877 TCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGA 818 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 ||||| | | |||||| | || ||| | || || || | |||| ||| ||| Sbjct 817 AGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTT 758 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | || ||||| || || |||||| ||||| ||||||||||| ||||| | || | Sbjct 757 CACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTT 698 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | ||| || || |||| | ||| |||||||| || ||||| |||||| || |||| Sbjct 697 AGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAA 638 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCAT 42542 | || || | ||||| || ||||| | | | |||| | | | | | |||||| | Sbjct 637 AGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCCT 578 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 | ||||| ||| || ||| | ||||||| ||||| |||| || | | ||| | Sbjct 577 TAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGT 518 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 |||| ||||||||||||| |||| || || | ||||||||||| ||||||||| Sbjct 517 ACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTT 462 >seq7211 Length=2975 Score = 206 bits (228), Expect = 4e-48 Identities = 745/1144 (65%), Gaps = 36/1144 (3%) Strand=Plus/Plus Query 71518 GCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA 71577 || ||||| ||||||||||| ||||||||||| ||||| ||||| ||| ||| || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 71578 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACT 71637 ||||| || |||||||| | ||| |||| ||||| || || ||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 71638 TTGACCACATCCTTTAGTTTGAGAAAATCAAA-TCTCCCATCTATT-----ACAAACACG 71691 ||| |||| | || || | | ||| | ||| ||| || ||||| Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 71692 TTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATA 71751 || | || | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 |||||||| |||||||| | || || || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 ||||| | ||| || || || ||| | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 71872 GCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTC--TTTCGTATT 71929 |||| | || |||||| || | || | | ||| | ||||||| | Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGTCTT--TCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT--TGTCTAATCCAGGACATTCATT 71987 ||| | | || || || ||||||||| ||| ||| |||||| || ||||| || Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAA-CATGTTGT-TAATCCTGGGCATTCGTT 1620 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 ||||||||||||| ||| ||| ||| | | || | | |||| || | || ||||| Sbjct 1621 GGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAAT 1680 Query 72048 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 ||| ||||| ||| || |||||||| | ||| | ||| || || || ||||||| | | Sbjct 1681 CCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTGA 1739 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 | | ||||| | |||||| | |||||| ||||| | || | || | | | || Sbjct 1740 GTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCTT 1799 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | |||| ||||| ||||| | || || || |||| |||| |||| | | ||| | Sbjct 1800 TTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATAG 1859 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATA 72285 | || | ||||| || || || || || || | || || || || | || Sbjct 1860 GTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCT-GCCCTGATG 1918 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 | | ||| | ||| || || || || || ||||| | |||| | | ||| Sbjct 1919 TCTGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTTAGA 1978 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AACAGCTAGAC 72402 || ||| |||| || || || ||| || |||| ||||| |||| || | || | Sbjct 1979 GTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT---C 2035 Query 72403 ATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 |||| | | || |||||| | |||||| | || || | |||||| || ||||| Sbjct 2036 ATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCA 2091 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTC 72517 | | || || || || || |||| ||||||||||| |||| | ||| || |||| Sbjct 2092 AAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAATTC 2150 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT-TTTC 72576 | | ||| | ||| | ||| || || ||||| |||| || ||| || || ||| Sbjct 2151 CAATACTGACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCATCTTTT 2209 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || | |||| | | |||| ||| | || |||||||| | ||| |||||| ||| Sbjct 2210 AAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTGTCG 2269 Query 72637 TAAA 72640 |||| Sbjct 2270 TAAA 2273 >seq11890 Length=3034 Score = 196 bits (216), Expect = 6e-45 Identities = 779/1202 (65%), Gaps = 38/1202 (3%) Strand=Plus/Plus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCT-TCCGGGCTATCAAA 71495 ||| |||||| ||||| ||||| ||||| ||||| | | ||| || || ||||| Sbjct 1057 CATGATAAATTGTTTCAAAAAT-TTCTTGATTGAACTGATAGGCTCTCTCATCT-TCAAA 1114 Query 71496 TGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 |||| | ||| ||| | |||| || || |||| ||| | ||| || |||||||| |||| Sbjct 1115 TGGA-ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGATTGGTC 1173 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATT 71613 | |||||| |||| || ||| || || | | | |||||| ||||| ||| || ||| Sbjct 1174 TATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAATGATT 1232 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTA----GTTTGAGAAAATCAAA 71669 | || ||||| || | |||| || | | ||||| |||| | ||||||| Sbjct 1233 CTGTTAAGATTCTTGG---TAACTTAGAA-AGTTACTTTATGAAGTTTCTCATAATCAAA 1288 Query 71670 TCTCCCATCTATTACAAACACGTTCAAGGCA-----ACAGATGCCAGATTACAAACGGCT 71724 |||| | ||| | || ||| | | || || ||||| || || || Sbjct 1289 GACTCCATTTGTTATGTA-----TCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCA 1343 Query 71725 ACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 | |||| | | | ||||| || || ||| || |||||| || ||| || ||| Sbjct 1344 ATTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTT 1403 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || | ||| | ||| || ||| ||| ||| |||||||| || | |||||| Sbjct 1404 CCAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTA 1463 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATTATATT 71903 || || ||||| | | ||| ||||| | || ||| | | || ||||| || | || Sbjct 1464 CCTGTCTCAATTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGATAGTCTT 1522 Query 71904 -CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 ||| | | || || | |||| |||||||| ||| ||||| ||||| | Sbjct 1523 TCTTCCAATACCTTGGGATT-CATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAA 1581 Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 | | | | || |||||| ||||| | | | ||| || || | || ||| Sbjct 1582 CTTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTA 1641 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082 | | ||||| || ||||| |||| ||| ||||| | |||| |||||| | ||| | | Sbjct 1642 CCCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATT 1701 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 | || ||||| |||||| | || | ||||| | | | ||||| |||||| || | Sbjct 1702 CTTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCT 1761 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 | ||||| || || | ||| | || || || || || | |||||||| | Sbjct 1762 CTAAGTAGATAGCGAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAG 1821 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 | | ||| ||||||| | ||| |||| || ||||| || ||||| || || || Sbjct 1822 TTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGA 1881 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | || || || |||| | |||||| || | || || | ||| || || | |||| Sbjct 1882 TGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAG 1941 Query 72323 AGATTAATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 | || || || | |||| |||| |||||||| || || | ||| |||||| |||| Sbjct 1942 AAATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCAT 1999 Query 72381 GTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 | | || ||||||||| ||||| ||| | || || || || || | ||| Sbjct 2000 CATTAAAAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCGTTGAAAAGAGTA 2057 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || | || || || |||||| | ||| || || || || |||||||| || | || Sbjct 2058 GGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAGCATCA 2117 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 ||||| || || || ||||| | || | | | ||||||||| |||||||||||| Sbjct 2118 ATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAACG 2177 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 ||||| ||| | |||||| | || | | ||| | ||| ||| | || || || | | Sbjct 2178 ATCTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAATCG 2237 Query 72619 TA 72620 || Sbjct 2238 TA 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670972757478400