Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq55 86.0 6e-12 >seq55 Length=1219 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || || || ||||| |||||||| || || | || || ||| ||| Sbjct 348 ACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCCTCG 289 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||| || ||||| | || || | ||| |||||||| || || ||||||||||| Sbjct 288 AGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 229 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | ||| | ||||| | ||| || || || | || | || ||| Sbjct 228 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTG 169 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 168 CCAGTAAGGGTCTTAACGAAGATTTGCATA 139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | ||||| || ||||| ||||| || || || | || || |||||| Sbjct 805 AACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTC 746 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| | || || | ||| ||||||||||| || ||||| || || Sbjct 745 GAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTG 686 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | || || || || | || | ||||| Sbjct 685 GATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTT 626 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || || ||||| |||| |||| Sbjct 625 ACCGGTAAGGGTCTTGACGAAGATTTACATA 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506888660428800