Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15602 132 4e-26 >seq15602 Length=1555 Score = 132 bits (146), Expect = 4e-26 Identities = 491/748 (66%), Gaps = 25/748 (3%) Strand=Plus/Minus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| |||||||| ||||| ||||| ||| ||| ||||| | ||||| | || || Sbjct 1331 ACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATGTCCATCCATTCAAAT 1272 Query 12935 GGATTTTTCGAACA-ATAGTATTTTT-TACACCCTAATTCTAGTAACAATCTGTCAGCAA 12992 ||||| | ||| |||||| ||| ||| || || | | || | |||||| |||| Sbjct 1271 GGATTCT-CGACTTGATAGTACTTTGGTACTCC-TAGGGCAAATAGAAGTCTGTCTGCAA 1214 Query 12993 CAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAG 13052 | ||| |||||||| |||| | | ||||||| || || || | || || | | Sbjct 1213 CGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCAACTCGACTGGTAGTG 1154 Query 13053 CTTCTGTTAAAAAGtttttttCTATATCAACTGC-TTCGATAACTATGTCTCTTATTACG 13111 || ||| || | ||| ||| ||||| || || | || |||| | | Sbjct 1153 ACTCACTTACGAACTCCAATTCAATAGTTACTGCGTTGGAGA--TAA-TCTCA-AGGA-- 1100 Query 13112 TTCTCTAATGGAGGATTTGATAGATG-----CTTAAACATCATACATGCAAAATCACAGT 13166 |||||| | | ||||| || | || ||| | | | ||| || ||||| || Sbjct 1099 TTCTCTCGTTGGAGATTTTATTGTTGATGTGCTTGTAGAGGAGACACGCGAAATCGGTGT 1040 Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 ||| ||||| ||||| || | || ||||| ||||| ||||| |||||||| || | Sbjct 1039 GCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACCAC 980 Query 13227 GTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 | || || | ||| || || | |||| || || || ||||| ||||| || ||||| ||| Sbjct 979 GCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGCT 921 Query 13286 GCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCC 13345 || || |||| | || || | | | | | ||| | ||||| || ||| Sbjct 920 GCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCT--CTC-CAATCCATTTGAGTGCC 864 Query 13346 CAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATAAttttt 13404 || | ||||||| || | | | ||||| | | || || || | | | | ||| Sbjct 863 CAATCAGCTTTTTTAGCTACTACTGGT-ATATTGTGGACAGCTTTGAAGAGAAATTCTTT 805 Query 13405 ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGAATGAATAT 13463 ||| | ||| ||| |||| || || || ||| | || |||| || || | Sbjct 804 TTCTTGTGGGTCACTAATTAAAGTGTCAAT-AAGAAGAGAATAAGTTTCACTGTGGATGT 746 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGT 13523 | |||||| || ||||| ||||| |||||||||||||| | || | | ||| | | Sbjct 745 TCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTAGATTTCAGTGC 686 Query 13524 AAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA 13583 | ||||| | || || ||||| |||||||| |||||| ||||||||| || || || | Sbjct 685 AGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAA 626 Query 13584 TGTGCTTAATAAAttttttttCGTTTTC 13611 ||||||||||| | | | ||||| || Sbjct 625 CATGCTTAATAAAGTGTCTCTCGTTGTC 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430878188455680