Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5287 167 5e-36 seq55 154 3e-32 seq18108 143 6e-29 seq6367 140 7e-28 seq15602 120 7e-22 seq18584 98.7 2e-15 seq18912 86.0 1e-11 >seq5287 Length=1089 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | |||||||||||||| || || |||||| Sbjct 414 ATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCA 355 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| |||||||||| | |||||||| || || || ||||||||||| || Sbjct 354 GATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGT 295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || |||||||| | || || || || Sbjct 294 GGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCA 235 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||||||||| ||||| | ||| ||||| || || | ||| Sbjct 234 ACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | || ||||| || | || |||||||| || Sbjct 867 CCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAA 808 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| ||||| || ||||| || || || || || || || ||||| || || || Sbjct 807 AGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGA 748 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| |||| |||||| || || || || || | || || ||||| || Sbjct 747 ATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACG 688 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| || || || || || || || ||||| Sbjct 687 TCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 >seq55 Length=1219 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || || || | || | ||||| || || || || ||||||||| Sbjct 825 ATTCCACCTCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCA 766 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| |||||||| |||||||||||||| ||||| || || |||||||| ||| Sbjct 765 CTAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGA 706 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || ||| || Sbjct 705 GGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCG 646 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| ||||| || || || || || | ||| Sbjct 645 ACATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || ||||| |||| ||| | || || || || ||||| || ||||| Sbjct 597 ATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCG 538 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| ||||||||||| || || || |||||||| || Sbjct 537 CTGAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGT 478 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || |||||||| || || ||||| || | ||| || || || Sbjct 477 GGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCA 418 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || |||| ||| Sbjct 417 ACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq18108 Length=1037 Score = 143 bits (158), Expect = 6e-29 Identities = 181/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 104318 CATACTTTATTTA--TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCT 104375 |||| | |||| | |||| ||||| || || ||||||| ||| | || |||||||| | Sbjct 878 CATATTGTATTCAGTTTCCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTT 819 Query 104376 GAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCC 104435 || ||||||||||||| ||||||||||| || || ||||| |||||||| ||||| | Sbjct 818 AGATGTTATAGTCAGATAACGTTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTC 759 Query 104436 TCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACG 104494 ||||| ||| | || || |||||||| || ||||| |||| | || | |||| | | Sbjct 758 TCTGTGAATCGGATGGAATACCTTCTTTGTCTTGAAT-TTTGTTCTTGATGCTTTCAATG 700 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 |||| || || || | || || ||||||||||| || | ||| | ||||| || Sbjct 699 TTATCTGATGGCTCCACGGCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATT 640 Query 104555 TGCAT 104559 ||||| Sbjct 639 TGCAT 635 Score = 136 bits (150), Expect = 9e-27 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104325 TATTTA--TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 |||||| | || || || || || | || || || | || ||||||||||| | ||| Sbjct 415 TATTTACATACCGCCCCTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATT 356 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||||||| || ||||| || ||||||| ||||| |||||||| || || ||||||| Sbjct 355 ATAGTCAGAGAGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTA 296 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || | ||||| ||||| || || || ||||| || || || || | || ||| | Sbjct 295 GTCGGCTGGTATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGGACTCAAAAGTCTCGTT 236 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || || ||||| ||||| ||||| |||||| ||||||| |||| ||| Sbjct 235 GGCTTCACATTCAAGGGTAATTGTCTTTCCAGTGAGTGTTCTTACAAAAATCTACAT 179 >seq6367 Length=732 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| || ||||| | | ||||| Sbjct 431 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCATCTTCCAACTACTTTCCG 490 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || ||||||||||| || || |||||||||||||||||||| || || Sbjct 491 GCAAAGATGAGTCTTTGTTGATCAGGGGGGATACCTTCTTTATCCTGAATCTTGGCCTTA 550 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || || || || |||||||||||||| || | || Sbjct 551 ACGTTCTCGATGGTATCAGAGGGCTCGACATCAAGAGTAATAGTCTTACCCGTCAAAGTC 610 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 611 TTGACGAAGATCTACATTTT 630 >seq15602 Length=1555 Score = 120 bits (132), Expect = 7e-22 Identities = 403/618 (65%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 || || ||||| | | | || ||| | |||||||| || | || || | | |||| Sbjct 445 GAGCCACTTTTGGAAGAAAATCCAAACAGATTTGTTATCCTACCTATCAAATACAATGAT 504 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || |||| ||||||||| | | ||| | || |||||| ||||||| | ||||| Sbjct 505 ATCTGGAAAATGTACAAAGATCAAATGGCTGCATTCTGGACTTCAGAAGAAATTGATCTA 564 Query 268793 TCTTATGACTTAATAGATTGGAAAA-ATTTAAAACCAGAAGAAAGAAGATTTATATCTTA 268851 || ||| | | |||||| | | | | || || | || ||| ||||| | Sbjct 565 GCTACTGATATTAAGGATTGGGAGAGACTCAATGACA-ACGAGAGACACTTTATTAAGCA 623 Query 268852 TATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTT 268911 | |||| || || ||||| | | ||| ||||| ||||| |||||| | | ||| || Sbjct 624 TGTTCTAGCCTTCTTTGCTGCTTCTGACGGTATAGTTAATGAAAATTTGGCTCAGAGATT 683 Query 268912 CTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 ||| || | | | ||||| || |||||||| || ||||||||||| || || Sbjct 684 CTGCACTGAAATCTAAGTGCCTGAGGCTAGATGTTTCTATGGATTCCAGATGATGATGGA 743 Query 268972 AAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA 269031 || || || || | || ||| | || || |||| || ||| | || | Sbjct 744 GAACATCCACAGTGAAACTTATTCTCTTCTTATTGACACTTTAATTAGTGAC--CCACAA 801 Query 269032 AAAGAAAAGACTATTTTCTTCTA---TGAGAACTATGGACT-GTGTGAGa-aaaaaaTCT 269086 || ||||| | || ||||| | || || || || || || |||||| || Sbjct 802 GAA--AAAGAAT-TTCTCTTCAAAGCTGTCCACAATATACCAGTAGTAGCTAAAAAAGCT 858 Query 269087 GAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTT 269146 || ||||| || |||||||| || | ||| | | || || || | || || || Sbjct 859 GATTGGGCACTCAAATGGATTGGAGAGACCGCTCAATTCGCCGAGAGACTTGTAGCCTTC 918 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 || ||||| || || ||||||||||| || || || | | || || ||| | ||||| Sbjct 919 GCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTTCTGGCTAAAGAAG 978 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266 | || ||||||||||| | || ||||| || |||||||| || ||||||||| | Sbjct 979 CGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAGAGACGAAGGTATG 1038 Query 269267 CACTGCGACTTCGCTTGT 269284 ||| ||| ||||| ||| Sbjct 1039 CACACCGATTTCGCGTGT 1056 >seq18584 Length=3078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| | | ||| | ||| | |||| |||||| | || ||||||||| Sbjct 2390 TCCTCCTCTTAATCGTAATACCAAATGGAGTGTACTTTCTTTTTCTATTTTATAGTCATT 2331 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || | | | ||||||| | | ||| ||||| || || |||| |||||||||||| Sbjct 2330 TAATGATAAATGATCTTCTAACTATGATCCGGCAAATATGAGTCTCTATTGATCAGGAGG 2271 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTA 104510 |||||| ||||| ||||||||||| ||| | ||| | ||| ||| || | Sbjct 2270 TATTCCCTCTTTGTCCTGAATCTTAAGTTTAAATAATTCGATTTCATCATCTAAGTAGCA 2211 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 | || || |||||||| ||||| |||||||| |||||||| Sbjct 2210 -ATGTATAGTTATAGTCTTTCCAGTTAGTGTTTTCACAAATAT 2169 >seq18912 Length=238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || ||| || || || || || || ||||| || Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151105714526720