Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15602 116 4e-21 >seq15602 Length=1555 Score = 116 bits (128), Expect = 4e-21 Identities = 403/622 (65%), Gaps = 17/622 (3%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| || ||||| |||| |||||| || || || |||||||| || ||||| | Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAAAGA 21593 ||| ||||| | || | ||| |||| ||| || ||||| ||| || | || ||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 21594 AAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCA 21653 | ||||||||||| || || || || || | || || || || || | | |||| Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGG-TCTCTCCA 879 Query 21654 ATATCCATTTTTCTGCCCATTTTGCCTTTTCTT-TAATACAATCA-ATTGTATCAATAGC 21711 || |||||| |||||| | || |||| || ||| | ||||| | ||| Sbjct 878 AT--CCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGG--ACAGC 823 Query 21712 TTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 ||| || ||| | |||||| | | || | || | ||| Sbjct 822 TTTGAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATA 763 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 ||||| || || || || ||| ||||| ||||| || |||||||| ||||| | Sbjct 762 AGTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGG 703 Query 21832 ACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 || | || | | |||| |||||||| |||||||| ||||| || ||| || Sbjct 702 CACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGC 643 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCA 21951 ||||| || || | | || || ||||| | || ||||| || | | | | | ||| Sbjct 642 AGCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCA 583 Query 21952 ATC--TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 ||| ||||| || | | || ||| | |||||| | ||||| || ||| || Sbjct 582 ATCCTTAATA--TCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGA 525 Query 22010 TTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTATTT 22069 | ||| ||||| ||||||||||||| ||| | || || | || ||||| |||| || Sbjct 524 TCTTTGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGT--TTG 467 Query 22070 GA--TTCAACTAAAAGTGGTTC 22089 || ||| | |||||||| || Sbjct 466 GATTTTCTTCCAAAAGTGGCTC 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531768888601600