Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15602 251 9e-62 seq7211 188 9e-43 seq11890 178 2e-39 >seq15602 Length=1555 Score = 251 bits (278), Expect = 9e-62 Identities = 415/596 (70%), Gaps = 2/596 (0%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||||||| ||||| ||| |||||||| ||| | ||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||| || ||||| || || || ||| || ||||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAA 937 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 || || || || || || ||||| | ||||||||| | | ||| | || || Sbjct 936 TATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAAT 877 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||| || | |||||||| || || || ||| || || | | | || || || Sbjct 876 CCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGAA 817 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 |||| | | |||||| | || ||| |||| || || | |||| ||| |||| Sbjct 816 GAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTC 757 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 || ||||| || || |||||| ||||| ||||||||||||||||| | | | Sbjct 756 ACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTA 697 Query 33663 TACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 | ||| || || |||| | |||||||||||||| ||||| |||||| || ||||| Sbjct 696 GATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAA 637 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCAT 33781 || || | ||||| || ||||| | | | |||| || || ||| | | |||||| | Sbjct 636 GAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCCT 578 Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 | ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| | Sbjct 577 TAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGT 518 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 |||| |||||||| |||| |||| ||| || | ||||||||||| ||||||||| Sbjct 517 ACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTT 462 >seq7211 Length=2975 Score = 188 bits (208), Expect = 9e-43 Identities = 748/1150 (65%), Gaps = 48/1150 (4%) Strand=Plus/Plus Query 62712 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA 62771 || || || ||||||||||||||||||||||| ||||||||||| ||| || || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 62772 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT 62831 ||||| || |||||||| | ||| |||| ||||| || || ||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 62832 TTGACCACATCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTATTA-CAAACATG 62885 ||| |||| | | || | | ||| | | | | | || || |||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 62886 TTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 62945 || | || | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || ||||| |||||||| | || ||| || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 63066 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--TTTCGTATA 63123 |||| | || |||||| || | ||| | ||| | ||||||| Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGTC--TTTCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATCC 63182 ||| | | || || || ||||||||| | |||| ||||| || ||||| | Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGTT-AATCCTGGGCATTCGTTG 1621 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGA 63239 ||||||||||| | ||| ||| |||| |||| || | | |||| || | || ||| Sbjct 1622 GGACACATCAATGTCCAGTCT---TCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGA 1678 Query 63240 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63298 ||||| ||||| ||| || |||||||| | ||| | || || || || ||||||| | Sbjct 1679 ATCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCT 1737 Query 63299 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 || | ||||| | |||||| | |||||| ||||| | || | || | | | || Sbjct 1738 GAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACC 1797 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 | |||| ||||| ||||| | || || || |||| |||| |||| | | ||| Sbjct 1798 TTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCAT 1857 Query 63419 TGGAATAATACCGTTTGA-TATACCATTGGTACCGGAGATAT-AGCTTCCACTGGCACGA 63476 || || | || ||||| ||| || || || || || | || || ||| | || Sbjct 1858 AGGTATCAATCCATTTGAGTAT-CCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 63477 -ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 | | || | ||| | ||| || || || || || ||||| | |||| | | | Sbjct 1917 TGTCTGAC--ACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCT 1974 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAA--AACAGCT 63592 || || ||| ||||||| || || ||| || |||| ||||| |||| || | || Sbjct 1975 TAGAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT 2034 Query 63593 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 ||||| | | || |||||| | |||||| | || || | |||||| || | Sbjct 2035 ---CATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGA 2087 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGA 63707 |||| | | | || || || || |||| |||||| |||| |||| | ||| ||| Sbjct 2088 ACCAAAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGA 2146 Query 63708 ATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 ||||| |||| ||| | ||| | |||||| || ||||| |||| || ||| | | Sbjct 2147 ATTCCAATACT--GACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCA 2203 Query 63766 T-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 | ||| || | |||| | | |||| ||| | || |||||||| | ||| ||||| Sbjct 2204 TCTTTTAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCT 2263 Query 63825 CGTTCGTAAA 63834 | ||||||| Sbjct 2264 CTGTCGTAAA 2273 >seq11890 Length=3034 Score = 178 bits (196), Expect = 2e-39 Identities = 744/1154 (64%), Gaps = 48/1154 (4%) Strand=Plus/Plus Query 62685 TCAAATGGATAATTTAAGA-GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62743 ||||||||| | ||| ||| | |||| || || |||| ||| | |||||| |||||||| Sbjct 1110 TCAAATGGA-ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGAT 1168 Query 62744 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 62802 |||||||||||| |||| ||| ||| || || | | | |||||| ||||| ||| | Sbjct 1169 TGGTCTATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAA 1227 Query 62803 TAATTTTATTGAGATTTCTGACAATTACTTTGACC---ACATCCTTCAGTTTGAGAAAAT 62859 | ||| | || ||||| || || ||| || || | | ||||| | ||| Sbjct 1228 TGATTCTGTTAAGATTCTTGGTAA---CTTAGAAAGTTACTTTATGAAGTTTCTCATAAT 1284 Query 62860 CAAATCGCCCATCTATTACAAACATGT-TCAAGGCA-----ACAGATGCCAGATTACAAA 62913 |||| |||| | ||| ||| || ||| | | || || ||||| || | Sbjct 1285 CAAAGACTCCATTTGTTA------TGTATCTAGGGAGTGATATTGAGGCAAGATTGCACA 1338 Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973 | || | |||| | | | ||||| || |||||| || |||||| || ||| | Sbjct 1339 CAGCAATTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTA 1398 Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033 | ||||| | ||| | ||| || ||| ||| ||| |||||||| ||| | | Sbjct 1399 TTGTTCCAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGG 1458 Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATT 63092 ||||||| || ||||| | | ||| ||||| | || ||| | | || ||||| || Sbjct 1459 GAGTACCTGTCTCAATTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGATA 1517 Query 63093 ATAGATTTGTATC--TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTC 63150 | ||| | | | | || ||| ||| ||||| || ||| ||||| |||| Sbjct 1518 GTC--TTTCTTCCAATACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTC 1575 Query 63151 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63210 | ||| | | | || ||||| ||||| | | | ||| || |||| | Sbjct 1576 CGTGAACTTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGT 1635 Query 63211 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63270 | | || | ||||| || ||||| |||| ||| ||||| | |||| |||||| | || Sbjct 1636 CTCTTACCCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTC 1695 Query 63271 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330 | | ||| || ||||| |||||| | || | ||||| | | | ||||| ||||| Sbjct 1696 TTTATTCTTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCC 1755 Query 63331 ACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTA 63384 | || || ||||| || || | ||| || || | ||||| || || || | Sbjct 1756 ATGGCTCTAAGTAGATAGCGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAA 1809 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 |||||||| || | ||| ||||||| | ||| |||| || || ||||| |||| Sbjct 1810 CATATCTAGCAGTTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGTCCAT 1869 Query 63445 TGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63504 | || || ||| || || || |||| | ||||| || | || || | ||| | Sbjct 1870 TAGTTCCCTTGATGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCAC 1929 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTT-TTAAC-GTGTCATAGATACCCTCTATGCT 63562 | || | ||||| || || || | |||| |||| || ||||| || || | || Sbjct 1930 CAGCACTCTTAGAAATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGA 1987 Query 63563 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCA 63620 ||||| |||| | | || ||||||||| ||||| ||| | || || || Sbjct 1988 GTCATCCTTCATCATTAAAAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCG 2045 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 || || | ||||| | || || || |||||| | ||| | || || || |||||| Sbjct 2046 TTGAAAAGAGTAGGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCA 2105 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 || || | || ||||| || || || ||||||| || | | | ||| ||||| Sbjct 2106 ATTGCAGCATCAATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGG 2165 Query 63741 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63800 ||||||||||||||||| || | |||||| | || | | ||| | ||| ||| | Sbjct 2166 GGTCTTTCAACGATCTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATAT 2225 Query 63801 CCAAAATAGTTGTA 63814 || || || | ||| Sbjct 2226 CCGAAGTAATCGTA 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622792709094400