Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq55 154 1e-32 seq5287 116 4e-21 seq6367 107 2e-18 seq18108 105 6e-18 >seq55 Length=1219 Score = 154 bits (170), Expect = 1e-32 Identities = 179/240 (75%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 26757 TAGTCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGA 26815 || |||| |||| |||||| | || || || || | ||||| ||| | |||||| | || Sbjct 127 TAATCAACCAAATATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGA 186 Query 26816 ATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGAT 26875 | || | |||||||| || | ||||| ||||| ||||||||||| || Sbjct 187 CGTTGAGCCCTCTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTAT 246 Query 26876 ACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGT 26935 || |||||||||||||||||||||| || || || |||||||| || | |||| | | Sbjct 247 CCCACCCGATCAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCT 306 Query 26936 CAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| ||||| ||||| || || ||| ||||| ||||||| ||||| |||||||| Sbjct 307 CAGTGACTACAACATCCAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGAGGAGG 366 Score = 141 bits (156), Expect = 9e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 |||||||| | ||||| | || | || || |||||||||||| | ||||| Sbjct 392 ACTGGAAAGACCATCACTCTTGACGTTGAGCCATCAGACACCATCGAGAATGTCAAGGCT 451 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||| ||||| || || ||||||||||||||||| || | | || || Sbjct 452 AAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTTATCTTTGCTGGAAAG 511 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| ||||||| |||| | |||||||||| ||||||||||| || || ||| ||||| Sbjct 512 CAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCAAAAGGAGTCAACTCTCCAT 571 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| ||||| ||||| || Sbjct 572 TTAGTCCTTAGACTCAGAGGTGG 594 Score = 134 bits (148), Expect = 1e-26 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || |||||||||||| Sbjct 656 GACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 715 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| || || |||||||||||||| | |||| | | || ||||||||| Sbjct 716 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAAC 775 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || ||||| |||| |||| || ||||||||||| |||| Sbjct 776 ATCCAAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGAGGTGGAA 824 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || || || | || ||| |||| | || || Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATC 882 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | ||||| ||||| ||||| ||||| || || |||||||| Sbjct 883 AGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCA 942 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | || || || ||||| || |||| |||| | |||||||| Sbjct 943 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAA 1002 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || || | || |||| || ||||| ||||| || Sbjct 1003 CATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGG 1050 >seq5287 Length=1089 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||| || | || ||||| |||||||||||||| | || ||| | || | || || Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCT 244 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || || ||||||||| Sbjct 245 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 304 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || || || | | ||||| | |||| | | ||||| ||| Sbjct 305 CAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAAC 364 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||||||| ||||| ||||||| ||||| |||||||| Sbjct 365 ATCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGG 411 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || || || | |||||| |||| | ||| || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | ||||| |||||| ||||||||||| || || ||||| ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | || || || ||||| || || | |||| | ||||||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||| ||||| || | || |||| || ||||| |||||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGG 867 >seq6367 Length=732 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || |||||| || |||||||| || || || |||||| Sbjct 567 GATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAA 508 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | | ||| || | | ||||||| |||| | | || || ||| Sbjct 507 CAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAAC 448 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| | || ||||| |||||||||||||||| Sbjct 447 ATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 >seq18108 Length=1037 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| | ||| ||||| || || | ||||| | | | || || Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 26829 GACACCATCGAGCAAG--TCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 || | ||| || ||| |||| | || ||| ||||||||||| || || ||||| Sbjct 695 GATAACATTGA--AAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATT 752 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTAT 26945 ||| ||||| || | | |||||||| || || || | ||| ||||| | | |||||| Sbjct 753 CACAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAG-AACGTTATCTGACTAT 811 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||||| |||||||||| ||||| ||| | || || ||||| ||||||||||| Sbjct 812 AACATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGGAAA 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478543691724800