Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11890 232 2e-55 seq15602 230 6e-55 seq7211 156 1e-32 seq18432 87.8 5e-12 >seq11890 Length=3034 Score = 232 bits (256), Expect = 2e-55 Identities = 739/1131 (65%), Gaps = 20/1131 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 |||||||||||||| | || | | || || | ||||||| | || |||||| Sbjct 2230 TTCGGATATAAGACTCTTGAACGAGCATATCTTTTGAAAGTCAATGGAAAGATCGTTGAA 2171 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 | || ||||||||| | | | ||| | | |||||||| | ||| ||||||| Sbjct 2170 AGACCCCAGCATATGCTTCTCAGAGTTTCAGTAGGTATCCACAAAACTGATATTGATGCT 2111 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATG 363570 || ||||| |||||||| | | |||| | | ||||| || || || || || | Sbjct 2110 GCAATTGAGACATATAACTTAATGAGTGATAGATGGTTCACTCATGCAACCCCTACTCTT 2051 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | ||| ||||| || | || ||| | ||| | || || ||| ||| |||||||| Sbjct 2050 TTCAACGCTGGTACCCCAAAACCATAAATGAGTAGCTGTTTCCTTTTAATGATGAAGGAT 1991 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || || || | || || | ||| || |||||||| |||| | ||||| |||| ||| Sbjct 1990 GACTCTATTCACGGAATATATGATACTCTTAAGAACGTTGCTTTGATTTCTAAGAGTGCT 1931 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGCAC 363749 || ||| |||| | | | |||||| | | | ||||| |||||||| || || Sbjct 1930 GGTGGAGTTGGACTTGCTGTTCACAATATCAGAGCCACAG-GTAGTTACATCAAGGGAAC 1872 Query 363750 AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 ||| |||| ||||| || ||||||||||| | || || | | ||||| || || Sbjct 1871 TAATGGACACTCAAATGGACTTGTTCCCATGCTCAGAGTTTTCAATGAAACTGCTAGATA 1812 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 || ||||| ||||| |||||| | || || | || ||||| || | ||||| || Sbjct 1811 TGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCTACTTAGAGCCATGGCA 1752 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 ||| ||| | ||||| || ||| | ||| | || ||| |||||||| |||| | || Sbjct 1751 TGCTGATGTCTTTGACTTCCTTCAACTCAGAAAGAACCATGGAAAAGAAGAATAAAGAGC 1692 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT-GGAGGCA- 363987 | ||| | |||| ||| || |||||| | || | ||| |||||| | || ||| || Sbjct 1691 TAGAGATTTATTCTTTGCTCTCTGGGTTCCAGATCTTTTCATGAAGAGGGTAAGAGACAA 1632 Query 363988 -GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 ||| ||||| | || || || ||| | ||| ||| || | || || || Sbjct 1631 CGGT---GATTGGACTCTTTTCTGTCCAAATGAAGCCAAAGGCCTCTATGAAGTTCACGG 1575 Query 364047 TGACGACTATGTTGC--TCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || || | || || | ||||| ||| |||||||| | || | | | ||||| Sbjct 1574 AGAAGAGTTTGAAGCCTTATATACTAAA--TATGAATCCCAAGGTATTGGAAGAAAGACT 1517 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || ||| ||| || ||| | || || || | ||||||||||| || ||| Sbjct 1516 ATCAAGGCAATGAAACTTTGGGAATCAATTATTGAAAGTTAAATTGAGACAGGTACTCCC 1457 Query 364165 TATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | || ||||| || || || | || || ||||| || | ||||| ||||| Sbjct 1456 TACATGCTTTATAAAGA-TCACGCTAATGGAAAATCAAACCAAAAGAATCTTGGAACAAT 1398 Query 364224 TCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || || | || |||||| ||||| |||||||| || |||| || || | ||| | Sbjct 1397 AAAG-AGTTCTAATCTATGTTGTGAGATCATTGAATATACTTCTCCAGATGAAATTGCTG 1339 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACC 364342 | || || ||||| || || | || || | ||| | |||| ||||| | Sbjct 1338 TGTGCAATCTTGCCTCAATATCACTCCCTAGATACATAACAAATGGAGTCTTTGATTATG 1279 Query 364343 AGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGA 364402 || | ||| || | ||||| | | | ||| ||||| ||| | || || | Sbjct 1278 AGAAACTTCATAAAGTAACTTTCTAAGTTACCAAGAATCTTAACAGAATCATTGATGGCA 1219 Query 364403 ATTATTATCCAATTCC--TGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 |||| ||||| || | ||| ||| | || |||||| | ||| | || || ||| | Sbjct 1218 ATTACTATCC--TTGCGATGAGGCCAAAAACTCAAATATGAGACATAGACCAATCGGTAT 1161 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA 364511 ||||| |||| || ||||| | ||||| | ||||| || ||||||| Sbjct 1160 CGGTGTTTAGGGACTAGCTGATGCCCTTATGCTTCTCAAAATTCCATTTGA 1110 >seq15602 Length=1555 Score = 230 bits (254), Expect = 6e-55 Identities = 547/809 (68%), Gaps = 21/809 (3%) Strand=Plus/Plus Query 22141 GAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACAT 22200 ||||||||| | | ||||||| | ||||||| | ||| | || ||||| ||| Sbjct 553 GAAATTGATCTAGCTACTGATATTAAGGATTGGGAGAGACTCAATGACAACGAGAGACAC 612 Query 22201 TTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTA 22260 ||||| || || ||||||| ||||||||| | | |||||||||||| ||| ||| | Sbjct 613 TTTATTAAGCATGTTCTAGCCTTCTTTGCTGCTTCTGACGGTATAGTTAATGAAAATTTG 672 Query 22261 G-TGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCA 22319 | | | ||| |||| ||||||| || || ||||| |||||||||||||| | || Sbjct 673 GCTCAGAGATTCTGCA-CTGAAATCTAAGTGCCTGAGGCTAGATGTTTCTATGGATTCCA 731 Query 22320 AATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGA 22379 |||||||| || || | ||| ||||| |||||| | | || | |||| | Sbjct 732 GATGATGATGGAGAACATCCACAGTGAAACTTATTCTCTTCT--TATTGACACTTTAATT 789 Query 22380 AGATAAAGACGA-ACAACGAAACT-TATTCCGCGCGATTCGCACCATTCAATCAATTAAG 22437 || | || | | || ||| | | ||| || | | || || | | | | Sbjct 790 AGTGACCCACAAGAAAAAGAATTTCTCTTCAAAGCTGTCCACAATATACCAGTAGTAGCT 849 Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCA-TTCGCGGAACGTC 22495 || || || |||||||| || |||||||| | | | || || ||| ||||| || | | Sbjct 850 AAAAAAGCTGATTGGGCACTCAAATGGATTGGAGA--GACCGCTCAATTCGCCGAGAGAC 907 Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 || | || || || | ||||| ||||| ||||||||||| | || || |||| || | Sbjct 908 TTGTAGCCTTCGCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTTCT 967 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 ||||||| || |||| ||||||| ||||| || || |||||||| || ||| ||| Sbjct 968 GGCTAAAGAAGCGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAGAG 1027 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAAC 22675 | || ||| | || |||||||| |||||| | || || || || |||| ||||| Sbjct 1028 ACGAAGGTATGCACACCGATTTCGCGTGTCTCCTCTA---CAAGCACATCAACAATAAAA 1084 Query 22676 T-TCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC--TTGAACGTCTAT 22732 | |||| | || | | ||||| ||||| | || ||||| ||| ||||| | Sbjct 1085 TCTCCA-ACGAGAGAATCCTTGAGATTATCTCCAACGCAGT--AACTATTGAATTGGAGT 1141 Query 22733 TTATTTGCGAGGCGTTACCAGT-AAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 | | | ||| | ||||||| ||| | || ||||| || | || |||||| Sbjct 1142 TCGTAAGTGAGTCACTACCAGTCGAGT-TGATCGGTATGAACTCAAAACTCATGAGTCAG 1200 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || || | || |||||||| | || || || | || || ||||| | ||| | Sbjct 1201 TACATCATGTTCGTTGCAGACAGACTTCTATTTGCCCTAGGAGTACCAAAGTACTATCAA 1260 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 |||| |||||||||||||||||||| | ||||| | ||| || || || ||||| Sbjct 1261 GTCGAGAATCCATTTGAATGGATGGACATGATTTCTTTAACAGGCAAAACTAACTTCTTT 1320 Query 22912 GAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||||| ||||| ||||| ||||| || || Sbjct 1321 GAAAAGAGAGTCGGTGAGTACCAGAAGGC 1349 >seq7211 Length=2975 Score = 156 bits (172), Expect = 1e-32 Identities = 841/1327 (63%), Gaps = 29/1327 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| || |||||| | | ||| ||||||||| || || | ||| |||| Sbjct 2088 TTCACTCACGCTACCCCAACACTCTTTAATTCTGGAACTCCAAAGCCTTAAATGAGTTCT 2029 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTA-AGAA 363665 ||||| | ||| ||||| || ||||| || || ||||||||||| || || | | || Sbjct 2028 TGCTTCTTATTAACCATGAAAGAGGATTCAATTGACGGTATCTTTGAGACTCTAAGATAA 1969 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 | || |||| || ||| ||| || || |||||||| || | | | | || Sbjct 1968 ATC-GCAGTTATCTCAAAGGCTGCTGGAGGTATTGGTGTCTCAGTGTCAGACATCAGGGC 1910 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | || ||||||| | || ||| |||||||| ||||| || | || ||||| Sbjct 1909 AGCTGACTCTTACATTAGAGGAACAAACGGATACTCAAATGGATTGATACCTATGCTAAA 1850 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || ||| | | ||||| ||||| || || || || || || || | ||||| || || Sbjct 1849 GGTTTTTAATGACACTGCAAGGTATGTTGATCAAGGAGGCGGCAAAAGAAAAGGTGCTTT 1790 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| | ||| | || || ||||| ||||||| || || ||| | ||| | || || Sbjct 1789 TGCAGTCTATGTTGAACCATGGCATGCAGATATTTACGACTTCCTTCAACTCAGAAAGAA 1730 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 || ||||| || | ||| | |||||||||||||| || ||| || | ||| Sbjct 1729 TCATGGTAAAGAAGAGAACAGAGCAAGAGATCTGTTCTATGCTCTCTGGATTCCAGACTT 1670 Query 363966 TTTTATGAAGCGCGTGGAG--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||| | || ||| | | | ||| | ||| || | | || || ||||||| Sbjct 1669 ATTCATGAGAAGGGTTGAGAAGAATG-AAG-ACTGGACATTGATGTGTCCCAACGAATGC 1612 Query 364024 CCAGGTCTTTC-CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA-- 364080 ||||| | | |||| ||||| || || | || | || || || |||| ||| Sbjct 1611 CCAGGATTAACAACATGT-TGGGGAGAGGAATTTGATAAACTTTATGAGGAGTACGAAAT 1553 Query 364081 --TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGA-AGCTATGGTTTGCCATCATG 364137 |||| | ||| | ||||| | || | ||| ||||||| || | Sbjct 1552 TTCCGGACG---AGG-AAGAAAGACGA-TCAAGGCTAGATGGCTATGGACCTAGATTGTT 1498 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || || | |||| || || |||||||||||| ||||||||||| | || ||| | || Sbjct 1497 GAATCATAAGTTGAAACTGGGACACCCTATATGCTGTACAAAGATACTTGTAACAGAAAA 1438 Query 364198 TCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAA 364257 || || || || | |||||| || | || || ||||| || || | || Sbjct 1437 TCTAATCAACAAAATCTTGGTTGTATAAAATCCTCGAATCTTTGTACTGAAATCGTAGAG 1378 Query 364258 TACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTT 364317 | || || ||||| | ||| || ||||||||||| || || || || ||| Sbjct 1377 TTTACTAGCCCAGACGAAATTGCTGTCTGTAACCTTGCTTCTATAGCACTCAATAGATTT 1318 Query 364318 G---TAAAAGATGGTA---CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371 | | ||||| || | |||| | || | | | | |||||| | Sbjct 1317 GTTATTAAAGAGACTAAAGAGTATGACTATGAGAAGTTACACTATGTAACCAAGAGAATC 1258 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 || ||||| ||||| |||| || || ||| | ||||| || |||||||| | | Sbjct 1257 ACCAAGAATCTAAACAAGATTATTGATAACAATCACTATCCTATCCCTGAAGCTAAATAT 1198 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || ||| | | ||| | || || ||| ||||||| || || |||| || | || | Sbjct 1197 TCAAATCTTAGACATAGACCAATCGGTATTGGTGTTCAAGGATTCGCAGATGCCCTTCAG 1138 Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAA 364551 || | || || |||| || ||| | |||| || ||| | || |||||| Sbjct 1137 TTGTTGAAAATCCCATTCGAAGATCCTCAGGCTCTCAGACTTAATGAACTTATTTTTGAA 1078 Query 364552 ACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611 || || ||| ||| ||||| || || || | |||| || ||||| || Sbjct 1077 ACCATCTATCATGCTTCAATGGAAGCATCAATGGAATAAGCAATGGCCGAGGGACCTTAT 1018 Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 |||| |||| ||||| | || || ||||||||| | ||||| || ||| || Sbjct 1017 GAGACTTTCTAGGGTTCCCCATTATCCCAAGGAAAATTCTAATTTGACCTTTGGGATAAG 958 Query 364672 ACGCCATCTGTCCGATGGA----ACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGG 364727 | ||||| || ||| || | ||||| | || | | | || | ||| || || Sbjct 957 AAGCCAT-GCTCAGATAGATACGATTGGGAGAAATTAAGATAAGATGTGATGAAACACGG 899 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 || | ||||| || | | || || ||||| || ||||| || || ||||| | || Sbjct 898 AGCTAGAAACTCTCTACTCATTGCCCCTATGCCAACTGCTTCCACATCATAGATCTTGGG 839 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||| || || ||| || |||| || ||| |||| || | | ||||| | || Sbjct 838 AAATAATGAAACCTTTGAGCCGTACACTTCTAATGTTTACACAAGAAGAGTTCTAGCAGG 779 Query 364848 AGAATTT 364854 ||||||| Sbjct 778 AGAATTT 772 >seq18432 Length=8094 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 27235 TACGAAGGCGCAATTGTTATTGATGCAAAATCGGGG-TTTTATACGGATCCAGTCGCCAC 27293 |||||||| ||| | || ||||| || || | | || |||||||| ||||| || || || Sbjct 1791 TACGAAGGTGCAGTCGTCATTGA-GCCAACTAGAGGATTTTATACTGATCCCGTAGCAAC 1849 Query 27294 ACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTACTCAAC 27353 | | || || || ||||| ||||||||||| ||| | ||||| ||| |||| ||||| || Sbjct 1850 ATTGGATTTCGCTTCACTTTATCCATCAATCATGATGGCTCATAATCTATGCTACTCTAC 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303022287514880