Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55 134 1e-26 seq5287 120 3e-22 seq18108 109 5e-19 seq6367 109 5e-19 >seq55 Length=1219 Score = 134 bits (148), Expect = 1e-26 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 23983 CAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| |||| |||||| | || || || || | ||||| ||| | || ||| | || || Sbjct 131 CAACCAAATATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTT 190 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| || |||||||| || | ||||| ||||| ||||||||||| || || Sbjct 191 GAGCCCTCTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCA 250 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 ||||||||||| ||||| |||| || || ||||||||||| || | ||||| | |||| Sbjct 251 CCCGATCAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGT 310 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| ||||| || || || | ||||| || | ||| | |||||||| Sbjct 311 GACTACAACATCCAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGAGGAGG 366 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACA 24073 |||||||| | || || | || || ||| ||| | |||||||||||| | ||||| Sbjct 392 ACTGGAAAGACCATCACTCTTGACGTTGAG-CCATCAGACACCATCGAGAATGTCAAGGC 450 Query 24074 AAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAA 24133 |||||| ||||| ||||| || || ||||||||||| ||||| || | | || || Sbjct 451 TAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTTATCTTTGCTGGAAA 510 Query 24134 GCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 |||||| ||||||| ||||| | ||||||| || ||||||||||| || || || | || Sbjct 511 GCAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCAAAAGGAGTCAACTCTCCA 570 Query 24194 TTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| | ||| | ||||| || Sbjct 571 TTTAGTCCTTAGACTCAGAGGTGG 594 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || || || | || || || | || ||| |||| |||||| | Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCT 655 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| || || ||||| || |||||||||||| Sbjct 656 GACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 715 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || || ||||||||||| | ||||| | | || || |||||| Sbjct 716 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAAC 775 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || ||||| | || || || | ||| | ||||| ||| Sbjct 776 ATCCAAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGAGGTGGA 823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | |||||| |||| || ||| ||| Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAG-CCAT 881 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || || || || | ||||| ||||| ||||| ||||| || || ||||||| Sbjct 882 CAGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATC 941 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| ||||| || | || || |||||||| || |||| |||| | || |||| Sbjct 942 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATA 1001 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||| ||||| || || || |||| || || | ||| | ||||| || | || || Sbjct 1002 ACATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGGTCAATGAT 1058 >seq5287 Length=1089 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || ||||| |||||||||||||| | |||||| | || || || |||| | Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGA-GCCATC 243 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||| || || ||||| || || |||||||| Sbjct 244 TGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCA 303 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||||| || | || || ||| | | ||||| | ||||| | | || || || Sbjct 304 ACAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAA 363 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||||||||| | ||||| || ||||| | |||||||| Sbjct 364 CATCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGG 411 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || ||| |||| || || ||| | Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAA-CCATC 699 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | ||||| |||||| ||||||||||| || || ||||| || Sbjct 700 AGACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCA 759 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || || |||||||| || || | |||| | || ||||| Sbjct 760 ACAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAA 819 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||| ||||| || |||| || || ||||| | |||||||| Sbjct 820 CATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGG 867 >seq18108 Length=1037 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||||| |||| | |||||||| | |||||| | ||| || |||||||| || | Sbjct 188 TTTGTAAGAACACTCACTGGAAAGACAATTACCCTTGAATGTGAAGCCAACGAGACTTTT 247 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 ||| ||||| ||||| ||||| ||||||||||| |||| |||||||||| Sbjct 248 GAGTCCGTCAAGGCCAAGATCCAAGACAAGGAAGGCATACCAGCCGACTAACAGAGACTT 307 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | ||||| || | ||||||| ||||| | || || ||||| | || ||| Sbjct 308 ATCTTTGCTGGCAAACAGTTAGAAGATGGCAGAACCCTCTCTGACTATAATGTCCAGAAA 367 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| | || |||||| | || || || Sbjct 368 GAATCAACTATTCACCTCGTTTTAAGACTTAGGGGCGG 405 Score = 102 bits (112), Expect = 7e-17 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| | ||| ||||| || || | || || | | || ||| ||| | Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAG-CCATC 693 Query 24051 -GACACCATCGAGCAAG--TCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || | ||| || ||| |||| | || ||| ||||||||||| || || ||||| Sbjct 694 AGATAACATTGA--AAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGAT 751 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 ||||||||| || | | ||||| || || || || | || ||||| | | || || Sbjct 752 TCACAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAG-AACGTTATCTGACTA 810 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| |||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 811 TAACATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGGA 862 >seq6367 Length=732 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || |||||| || Sbjct 630 AAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCC 571 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || ||||||||| | || || |||||| || |||||||| || || || ||| Sbjct 570 TCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGAT 511 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| ||||| || | | ||| ||| | | ||||||| |||| | | ||||| Sbjct 510 CAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTAC 451 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||||||||| || |||| || || || ||| | |||||||| Sbjct 450 AACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429832041475200