Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq55 89.7 5e-13 >seq55 Length=1219 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | || ||||||||||| |||||||| || || | ||| | |||| Sbjct 351 AGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCC 292 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || ||| | || | | || || || || ||||| ||||||||||| Sbjct 291 TCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 232 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | ||| | ||| Sbjct 231 TGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTT 172 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || ||||| || ||||| Sbjct 171 TTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 140 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTC 131081 || |||||||| | || |||||||||||||||||||| ||||| | ||| | || | || Sbjct 579 AGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCA-TC 521 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || || ||||| || || |||| | | || || || || ||||||||||| ||||| Sbjct 520 TTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTC 461 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | ||| | || || | | ||| | ||| | || | ||| Sbjct 460 TTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGT 401 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || ||||| |||| ||| Sbjct 400 CTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| ||||||||||| ||||| || || | || | ||| Sbjct 1035 AGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTTCCATCC 976 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || ||| |||| | | || || || || ||||||||||| ||||| Sbjct 975 TCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCC 916 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | |||||| | | ||| | |||| ||||| ||| Sbjct 915 TAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTAATGGTC 856 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||| || || || ||||| || ||||| Sbjct 855 TTACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471895740825600