Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15602 239 6e-58 seq11890 199 5e-46 seq7211 192 7e-44 >seq15602 Length=1555 Score = 239 bits (264), Expect = 6e-58 Identities = 415/598 (69%), Gaps = 4/598 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||||||| ||| | ||| |||||||| ||| ||||| || || || ||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || ||||| || |||||||| || ||||| || || || ||| || || |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 32838 | || || || || || || ||||| | ||||||||| | | ||| | || | Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGGTCTCTCCAA 878 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 |||| || | |||||||| || || || ||| || || | | | ||| || | Sbjct 877 TCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGA 818 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 ||||| | | |||||| | || ||| | || ||||| | |||| ||| ||| Sbjct 817 AGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTT 758 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCT 33018 | || ||||| || || ||| || ||||| ||||| ||||||||||| | | | Sbjct 757 CACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTT 698 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | ||| || || |||| | || ||||||||||| ||||| |||||| || |||| Sbjct 697 AGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAA 638 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 33137 | || || | ||||| || ||||| | | | |||| || || ||| | | |||||| Sbjct 637 AGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCC 579 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 || ||||| ||| || ||| | |||||| ||||| |||| ||| | | ||| Sbjct 578 TTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTG 519 Query 33198 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||||| |||||||| |||| |||| || || | ||||||||||| |||||||||| Sbjct 518 TACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTT 461 >seq11890 Length=3034 Score = 199 bits (220), Expect = 5e-46 Identities = 747/1149 (65%), Gaps = 38/1149 (3%) Strand=Plus/Plus Query 62540 TCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 62598 ||||||||| | ||| ||| | |||| || || |||| ||| | |||||| |||||||| Sbjct 1110 TCAAATGGA-ATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGAT 1168 Query 62599 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 62657 |||||||||||| |||| ||| ||| || || | | | |||||| ||||| ||| | Sbjct 1169 TGGTCTATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAA 1227 Query 62658 TAATTTTATTGAGATTTCTGACAATTACTTTGACC---ACATCCTTCAGTTTGAGAAAAT 62714 | ||| | || ||||| || || ||| || || | | ||||| | ||| Sbjct 1228 TGATTCTGTTAAGATTCTTGGTAA---CTTAGAAAGTTACTTTATGAAGTTTCTCATAAT 1284 Query 62715 CAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 62774 |||| |||| | ||| | | | || | || || ||||| || || || | Sbjct 1285 CAAAGACTCCATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAA 1344 Query 62775 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 62834 |||| | | | ||||| || |||||| || |||||| || ||| || |||| Sbjct 1345 TTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTC 1404 Query 62835 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 62894 | | ||| | ||| || ||| ||| ||| |||||||| ||| | ||||||| Sbjct 1405 CAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTAC 1464 Query 62895 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA-GCCTTTATTATAGAT 62953 | || ||||| | | ||| ||||| | || ||| | | || ||||| || | | Sbjct 1465 CTGTCTCAATTTAACTTTCAATAATTGATTCCCAAA-GTTTCATTGCCTTGATAGTC--T 1521 Query 62954 TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63011 || | | | || ||| ||| ||||| || ||| ||||| ||||| || Sbjct 1522 TTCTTCCAATACCTTGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAA 1581 Query 63012 CATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63071 | | | || || ||||| ||||| | | | ||| || |||| || | | Sbjct 1582 CTTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTA 1641 Query 63072 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 63131 | | ||||| || ||||| |||| ||| ||||| | |||| |||||| | ||| | || Sbjct 1642 CCCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATT 1701 Query 63132 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63191 | || ||||| |||||| | || | ||||| | | | ||||| |||||| || | Sbjct 1702 CTTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCT 1761 Query 63192 CCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATC 63245 | ||||| || || | ||| || || | ||||| || || || | |||| Sbjct 1762 CTAAGTAGATAGCGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACATATC 1815 Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGTC 63304 |||| || | ||| ||||||| | ||| |||| || ||||| || ||| ||||| || Sbjct 1816 TAGCAGTTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGT-CCATTAGTT 1874 Query 63305 CCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 63364 || ||| || || || |||| | ||||| || | || || | ||| || || Sbjct 1875 CCCTTGATGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCA 1934 Query 63365 ATTTTAGAGATTAATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCAT 63422 | ||||| || || || | |||| |||| |||||||| || || | ||| |||| Sbjct 1935 CTCTTAGAAATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCAT 1992 Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAA 63480 || |||| | | || ||||||||| ||||| ||| | || || || || || Sbjct 1993 CCTTCATCATTAAAAGGAAACAGCTACTCATTTATGGTTTTGGG--GTACCAGCGTTGAA 2050 Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540 | ||||| | || ||||| |||||| | ||| | || || || |||||||| || Sbjct 2051 AAGAGTAGGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGC 2110 Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600 | || ||||| || || || ||||||| || | | | ||| ||||| ||||| Sbjct 2111 AGCATCAATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCT 2170 Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 |||||||||||| || | |||||| | || | | ||| | ||| ||| | || || Sbjct 2171 TTCAACGATCTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAA 2230 Query 63661 ATAGTTGTA 63669 || | ||| Sbjct 2231 GTAATCGTA 2239 >seq7211 Length=2975 Score = 192 bits (212), Expect = 7e-44 Identities = 749/1150 (65%), Gaps = 48/1150 (4%) Strand=Plus/Plus Query 62567 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA 62626 || ||||| ||||||||||||||||||||||| ||||||||||| ||| || || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 62627 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT 62686 ||||| || |||||||| | ||| |||| ||||| || || ||||| || ||| Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTC 1264 Query 62687 TTGACCACATCCTTCAGTTTGAGAAAATCA-AATC-----GCCCATCTATTACAAACATG 62740 ||| |||| | | || | | ||| | || | | | || ||||| | Sbjct 1265 TTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTA 1324 Query 62741 TTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 62800 || | ||| | ||| || || ||||| || || | || | | | | | | || Sbjct 1325 TTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACG 1384 Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || ||||| |||||||| | || || || | ||||||||||||| ||| || Sbjct 1385 ATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTG 1444 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| | ||| || || || || | || || |||||||||| | ||||| | |||| Sbjct 1445 TTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATC 1504 Query 62921 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATA 62978 |||| | || |||||| || | ||| | ||| | ||||||| Sbjct 1505 TAGGTCCATAGCCATCTAGCCTTGATCGT--CTTTCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAA-ACATTGTCCAGTCCAGGACATTCATCC 63037 ||| | | || || || ||||||||| | |||| | ||| || ||||| | Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGT-TAATCCTGGGCATTCGTTG 1621 Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGA 63094 ||||||||||| | ||| ||| |||| |||| || | | |||| || | || ||| Sbjct 1622 GGACACATCAATGTCCAGTCT---TCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGA 1678 Query 63095 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 ||||| ||||| ||| || |||||||| | ||| | || || || || ||||||| | Sbjct 1679 ATCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCT 1737 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 || | ||||| | |||||| | |||||| ||||| | || | || | | | || Sbjct 1738 GAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACC 1797 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 | |||| ||||| ||||| | || || || |||| |||| |||| | | ||| Sbjct 1798 TTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCAT 1857 Query 63274 TGGAATAATACCATTGGATGTA-CCATTGGTCCCTGAGATAT-AGCTTCCACTGGCACGA 63331 || || | ||||| || ||| || || || ||| || | || || ||| | || Sbjct 1858 AGGTATCAATCCATTTGA-GTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 63332 -ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 | | || | ||| | ||| || || || || || ||||| | |||| | | | Sbjct 1917 TGTCTGAC--ACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCT 1974 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AACAGCT 63447 || || ||| |||| || || || ||| || |||| ||||| |||| || | || Sbjct 1975 TAGAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT 2034 Query 63448 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 ||||| | | || |||||| | |||||| | || || | ||||||||| | Sbjct 2035 ---CATTT----AAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGA 2087 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGA 63562 |||| | | | || || || || |||| |||||| |||| |||| | ||| ||| Sbjct 2088 ACCAAAGCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGA 2146 Query 63563 ATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 ||||| |||| ||| | ||| | |||||| || ||||| |||| || ||| | | Sbjct 2147 ATTCCAATACT--GACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCA 2203 Query 63621 T-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | ||| || | |||| | | |||| ||| | || |||||||| | ||| ||||| Sbjct 2204 TCTTTTAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCT 2263 Query 63680 CGTTCGTAAA 63689 | ||||||| Sbjct 2264 CTGTCGTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633474859264000