Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5287 111 1e-19 seq6367 107 2e-18 seq55 93.3 4e-14 seq18108 91.5 1e-13 >seq5287 Length=1089 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || ||||| | ||||| || ||||||| | || || ||| | || Sbjct 413 ATGTAGATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCC 472 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| || |||| ||| ||||| || || || ||||| || || Sbjct 473 GATACCATTGAAAACGTGAAAGCTAAAATTCAA-GACAAGGAGGGAATCCCACCCGATCA 531 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 | || | | ||||| ||||| || ||||| ||||||| | | || | |||||||| Sbjct 532 ATAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAA 591 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || || || || || ||||| || |||||||| Sbjct 592 TATTCAAAAGGAATCTACTCTCCACTTGGTCCTAAGACTCAGAGGAGG 639 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | |||||||| | ||||| |||| || || | || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || || ||||||||||| |||||||| |||||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| || || || || ||| | || || | | ||| | || || || Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||| |||||||| || || || || ||||| || |||||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGG 867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || |||||||| || || || || | || || | || || ||| | ||| Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCT 244 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| || ||||| || ||| Sbjct 245 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 304 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | |||| || || || || | |||||||| | | || | || ||||| Sbjct 305 CAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAAC 364 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||||| || ||||| || |||||||| Sbjct 365 ATCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGG 411 >seq6367 Length=732 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||| ||||| | || || | || || ||| Sbjct 632 GAAAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGC 573 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || |||||| | ||| | || | ||| || |||||||| || || ||| Sbjct 572 CCTCTGATACCATCGAGAACGTTAAGGCCAAGATTCAG-GATAAAGAAGGTATCCCCCCT 514 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| | | || |||||||| || | || ||||||| | || || ||| Sbjct 513 GATCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGAT 454 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||||||||| || || || || || | || || |||||||| Sbjct 453 TACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 >seq55 Length=1219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || ||||| | |||||||| ||||||| |||| || ||| | ||| Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCT 655 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| ||||| || || ||| Sbjct 656 GACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 715 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || |||||| | ||||| | | || | | || || || Sbjct 716 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAAC 775 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || || || || || || || || || || ||||| |||| Sbjct 776 ATCCAAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGAGGTGGAA 824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | ||||| | || || ||| | ||| Sbjct 140 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCT 199 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| || ||||| || ||| Sbjct 200 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 259 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || || ||| | || || | | || | | || ||||| Sbjct 260 CAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAAC 319 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || ||||| || || || || |||||||| Sbjct 320 ATCCAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGAGGAGG 366 >seq18108 Length=1037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| | || || |||||||| | ||||| | | |||||| | || Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||| | ||||| ||||||||||| |||||| | || | Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| |||||||| | || || | | | || | || || || Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAAC 814 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || |||||||||| || | |||||||| || || || ||||||||||| Sbjct 815 ATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGGAAA 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433223221289600