Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15602 201 1e-46 >seq15602 Length=1555 Score = 201 bits (222), Expect = 1e-46 Identities = 411/603 (68%), Gaps = 7/603 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 ||||| || ||||| || | ||||||||||| ||| ||||| ||||| |||||| | | Sbjct 1055 CACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGA 996 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaa 93210 ||||| | || || || ||||| ||||| || |||| |||| || | |||||||| || Sbjct 995 CCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAA 937 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||| || || || ||||| || || |||| | ||||| || | |||| | || | Sbjct 936 TATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGG--TCTCT-CC 880 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTT-CTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||||| | |||||||| |||||||| || ||| |||| | | || ||| | Sbjct 879 AATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTAC-TGGTATATTGTGGACAGCTT 821 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | ||| || | | || | || | || || || | |||||||| Sbjct 820 TGAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAG 761 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 ||||| |||| |||||||| || |||||||| |||||||||||||| || | | Sbjct 760 TTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCA 701 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 | | ||| | ||||||| | | ||||||||| |||||||| || || || | Sbjct 700 CTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAG 641 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 |||| || || | | |||||| ||||| ||| |||| | || || || | ||||||| Sbjct 640 CAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAAT 581 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | ||| | | ||||| | |||||| |||||| || | || | | || Sbjct 580 CCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTT 521 Query 93630 TGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTAT 93689 ||||||| | ||| || || | |||| || || | || ||||| | || || || | Sbjct 520 TGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTT 461 Query 93690 CTT 93692 ||| Sbjct 460 CTT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556722698521600