Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18108 140 3e-28 seq7211 136 3e-27 seq5287 122 7e-23 seq6367 113 4e-20 seq55 111 1e-19 >seq18108 Length=1037 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||| ||| ||||||||||| || ||||||||| ||||| | | Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || ||||| | |||||||||||||| || ||||||||| ||||| | Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||| ||||||||| | || || | || | || || || ||| Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAAC 814 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||| || || |||||||| | || || | ||||| Sbjct 815 ATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGG 861 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||| | |||||||| | ||| | || || || || | || |||||| ||| ||| Sbjct 178 GATGTAGATTTTTGTAAGAACACTCACTGGAAAGACAATTACCCTTGAATGTGAAGCCAA 237 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || |||| || || ||||||||||| || || ||| |||| | Sbjct 238 CGAGACTTTTGAGTCCGTCAAGGCCAAGATCCAAGACAAGGAAGGCATACCAGCCGACTA 297 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | ||||| ||||| |||||||||||||| ||| | | ||| |||| || || || Sbjct 298 ACAGAGACTTATCTTTGCTGGCAAACAGTTAGAAGATGGCAGAACCCTCTCTGACTATAA 357 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 | || |||||||| || || || | ||||| Sbjct 358 TGTCCAGAAAGAATCAACTATTCACCTCGTTTT 390 >seq7211 Length=2975 Score = 136 bits (150), Expect = 3e-27 Identities = 445/678 (66%), Gaps = 24/678 (4%) Strand=Plus/Plus Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570 || || || ||||||| ||| | |||||| |||| |||| | ||| || | || || Sbjct 1148 TCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTAGCT 1207 Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630 | ||||||| ||| | || ||||| ||||||| ||||||| | | || Sbjct 1208 TCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTCTTG 1267 Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTC----GCCTACATCGATGTCGACAAATTG 129686 ||||| || | |||| | ||| | | ||||| | || | | || |||||| Sbjct 1268 GTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCT-CTTTAATA---ACAAATCT 1323 Query 129687 ATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGAC 129746 ||||| || || || | || ||||| ||| |||||| | | | | |||| || Sbjct 1324 ATTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTAC 1383 Query 129747 AATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTC 129804 ||||| | || | ||| | ||||| || || | || | ||||||| ||| Sbjct 1384 GATTTCAGTACAAAGATTCGAGGATTTT--ATACAACCAAGATTTTGTTGATTAGATTTT 1441 Query 129805 ATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACA 129864 |||| |||| ||||||||||| ||| || || || || ||||| |||| | ||| ||| Sbjct 1442 CTGTTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACA 1501 Query 129865 AT---GGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTG-CCACATTTCTC 129920 || ||||| | | | || |||||||||| ||||| | | | || | | || Sbjct 1502 ATCTAGGTCCATAGCCA---TCTAGCCTTGATC-GTCTTTCTTCCTCGTCCGGAAATTTC 1557 Query 129921 GTATGCCACATACAGTTGTTCAAATT-CTGAGCCGTGTACGGTGTCGAGCAACGGCGATT 129979 ||| || |||| |||| ||||||| || || | | ||| | | ||| ||| Sbjct 1558 GTACTCCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGTTAATCCTGGGC-ATT 1616 Query 129980 CACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGG 130039 | ||||||||||| |||| | ||| | || || | | |||| || || || | Sbjct 1617 CGTTGGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTG 1676 Query 130040 GTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTT 130099 | | ||| || || || |||| ||||| ||| | | || || | ||||| | | || Sbjct 1677 GAATCCAGAGAGCATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTA-CCATGATTCTTT 1735 Query 130100 -TCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCG 130158 | |||| |||||| |||||||| || || ||||| ||||||||||| | ||| | || Sbjct 1736 CTGAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCA 1795 Query 130159 CCCTTCCGTTTGCCCCCT 130176 || || | |||||| ||| Sbjct 1796 CCTTTTCTTTTGCCGCCT 1813 >seq5287 Length=1089 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | || || ||||| || | ||||| || || |||||||||| || || | || Sbjct 413 ATGTAGATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCC 472 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| |||||||||||||||||||| || |||||||||||| Sbjct 473 GATACCATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAA 532 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 | | || || || ||||| || || || || ||| | ||| |||| |||||||| Sbjct 533 TAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAAT 592 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 593 ATTCAAAAGGAATCTAC 609 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || || ||||| || || || | || | || || || | | Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCT 244 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || ||||| ||||| ||||| |||||||||||| Sbjct 245 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 304 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || || ||||||| || | | ||| | || || |||||| Sbjct 305 CAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAAC 364 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || | ||||| || Sbjct 365 ATCCAGAAAGAATCTACTCTCCATTTGGT 393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | |||||||| || |||| || || || ||| | | Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||| | ||||| || |||||||||||||| ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || || || | ||||| | || | || || || ||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||| ||||||||| | || || ||| | || | | |||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGGT 868 >seq6367 Length=732 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| || ||||| || | |||||||| || || | Sbjct 631 AAAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCC 572 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | |||||| | || | | || || ||||| || || || ||||| || || || Sbjct 571 CTCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGA 512 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | || || |||||||| || |||| || ||| | ||| | || ||||| Sbjct 511 TCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTA 452 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||||||||| || | || || || ||| || | | |||||| Sbjct 451 CAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGGT 400 >seq55 Length=1219 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | || || || || || | || || || || |||||||||| || || | | Sbjct 368 ATGTAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCA 427 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| || || |||||||||||| Sbjct 428 GACACCATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 487 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || | || ||| | | ||| || ||| |||||| Sbjct 488 CAAAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAAC 547 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || || || | |||||||| Sbjct 548 ATTCAAAAGGAGTCAACTCTCCATTTAGT 576 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| || ||||| || | || || ||||| |||| | || || || | Sbjct 136 AAATATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCC 195 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || ||| | || || |||| || || |||||||| || ||||| |||||||| Sbjct 196 CTCTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGA 255 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | || || || || || || || | ||||| | | ||| || || || Sbjct 256 TCAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTA 315 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||| ||||| || || || | ||||| || Sbjct 316 CAACATCCAAAAGGAGTCAACTCTCCATTTGGT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419626509769600