Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5287 192 1e-43 seq55 192 1e-43 seq6367 172 1e-37 seq18912 140 6e-28 seq18108 140 6e-28 seq15400 87.8 3e-12 >seq5287 Length=1089 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || |||| ||||||||| || || || || || || || || Sbjct 849 ACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAAAGAGTTCTTCCGTCCTCA 790 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| || ||||||||||||||||||||||| ||||| ||||| | | Sbjct 789 AGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGAATACCTTCTTTGTCCTAA 730 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| || ||||||| || ||| || || | |||||| || || Sbjct 729 ATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGGGTGATAGTCTTA 670 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| || ||||| Sbjct 669 CCGGTGAGGGTCTTGACGAAGATTTGCAT 641 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || ||||| || || ||||| ||||| || || |||||||| Sbjct 621 ACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCC 562 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| |||||||| |||||||| | ||| |||||||| || || |||||||||||| Sbjct 561 AATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGTCTTGA 502 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || ||| || ||||| || | || || || || | |||||||| || Sbjct 501 ATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACATCAAGAGTGATGGTCTTG 442 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||| ||| Sbjct 441 CCGGTAAGGGTCTTAACGAAGATCTACAT 413 >seq55 Length=1219 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || || || || || ||||| ||||| ||||| || ||| ||| || || |||||||| Sbjct 576 ACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCTTCA 517 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || || ||||||||||| |||||||| || ||||||||||||||| Sbjct 516 AGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 457 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||||| || || || || | |||||||| ||| Sbjct 456 ATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGTCTTT 397 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||| ||| Sbjct 396 CCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| |||||||||||||| || || || || || ||||| || Sbjct 1032 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTTCCATCCTCA 973 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| || ||||||||||| |||||||| || ||||||||||| | Sbjct 972 AGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTAG 913 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| || || || |||| || || || || | ||| ||||| || Sbjct 912 ATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTAATGGTCTTA 853 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||||||||| || |||||| Sbjct 852 CCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||| ||||||||||| || || ||| || || || || || Sbjct 348 ACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCCTCG 289 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| |||||||||||||| |||||||| || ||||| |||||||| Sbjct 288 AGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 229 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| || |||||||| | | || || ||||||||||| ||||| Sbjct 228 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTG 169 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| || ||||| Sbjct 168 CCAGTAAGGGTCTTAACGAAGATTTGCAT 140 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| |||||||||||||| || || || || || ||||| Sbjct 804 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTCG 745 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| |||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 744 AGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTGG 685 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| || || ||||| | | || || || | ||||||||| || Sbjct 684 ATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTTA 625 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||||||||| || | ||| Sbjct 624 CCGGTAAGGGTCTTGACGAAGATTTACAT 596 >seq6367 Length=732 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | ||| |||||||| || || || |||||||||||||| ||||| || Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || |||||||| |||| ||| ||||| || |||||||||||||| || || || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || |||||||| ||||| ||| ||||||||| || | | || || Sbjct 521 ATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACA 580 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || || ||||| | ||||||||||| |||| |||| Sbjct 581 TCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATT 628 >seq18912 Length=238 Score = 140 bits (154), Expect = 6e-28 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| |||||||| |||||||| ||||| || || ||||| ||||||||||| || ||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || ||||||||| ||| |||| ||| | | || || || | ||||||||| || || Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462 || |||||||||||||| ||||||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 >seq18108 Length=1037 Score = 140 bits (154), Expect = 6e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || | ||| | || || | ||| | || || ||||| |||| |||| Sbjct 413 TTTACATACCGCCCCTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTAT 354 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || ||||| || || |||||||||||||| || || || || || ||||| |||| || Sbjct 353 AGTCAGAGAGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGT 294 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 ||| ||| ||||||||||||||||| ||||| |||||||||| ||| | || || | Sbjct 293 CGGCTGGTATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGGACTCAAAAGTCTCGTTGG 234 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||| | ||| || || ||||| ||||| || | || || |||| ||| Sbjct 233 CTTCACATTCAAGGGTAATTGTCTTTCCAGTGAGTGTTCTTACAAAAATCTACAT 179 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 |||||||| | || | | ||| || || | || || ||||||| ||||||||| || Sbjct 864 TTTCCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCA 805 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || | || || || || || | ||| || || || ||||| ||||| ||| |||| | Sbjct 804 GATAACGTTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGAT 745 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| ||||| ||||||||||| || ||||| | || ||| | |||| || || Sbjct 744 GGAATACCTTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCC 685 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | ||||| || || || || | ||| | || || || ||||| Sbjct 684 ACGGCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 Score = 96.9 bits (106), Expect = 6e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || | ||||||| | ||| ||||| || | ||||| | || ||| Sbjct 615 ACCAAGTGGAGTGTTGCTTCTTTTTATACGTTGTAATCTGATAAAGTCCTGCTGTCCTCT 556 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || ||||| | ||| | ||| || | || | ||||||||||||| Sbjct 555 AATTGCTTGCCTGCAAATATAATTCTCTATTGATCAGCGGGGACTCCTTCCTTGTCTTAG 496 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || ||| ||| || | ||| ||| | || ||| | || || ||||| Sbjct 495 ATCTTGGCTTTCACGCTCTCAATAGAGTC-GCTAGCCTCGCATTCGAGAGTAATAGTTTT 437 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| |||||||| ||| ||||| | ||| Sbjct 436 TCCAGTGAGGGTTCGGACAAATATTTACAT 407 >seq15400 Length=1765 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84450 GAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 84509 |||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct 188 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGT 247 Query 84510 TCGAGCCCCAC 84520 ||||||||||| Sbjct 248 TCGAGCCCCAC 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921393837644800