Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq55 132 1e-25 seq5287 131 4e-25 seq6367 111 4e-19 seq18912 100 7e-16 >seq55 Length=1219 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | |||||| || || | |||| || || |||||||| |||||||| Sbjct 1053 TGACCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCT 994 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | ||| || || | ||| || || |||||||| || | |||||| | Sbjct 993 GAAAGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGT 934 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || |||| ||| || || || |||||||| |||| ||| | || Sbjct 933 GGGATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCA 874 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || ||||| ||||| || ||||||||||| || |||||| Sbjct 873 ACATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| |||||||| || || | |||||||| | ||||||||| ||||| Sbjct 786 TCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAA 727 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| || || ||||| ||||| ||||| || || || |||||| Sbjct 726 ATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTT 667 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 666 TCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACG 607 Query 288463 AATATCTGCAT 288473 || || | ||| Sbjct 606 AAGATTTACAT 596 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||||||| || | ||| | || || ||||| || || |||||| | Sbjct 594 CCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTG 535 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||| ||||| || ||||| || | |||||| |||| Sbjct 534 AGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 475 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || || || || || || || || || | || | || || Sbjct 474 ATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACG 415 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||| ||| Sbjct 414 TCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq5287 Length=1089 Score = 131 bits (144), Expect = 4e-25 Identities = 174/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 288233 TGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGA 288292 |||||||| || || || | |||||| || || | |||| ||| ||| |||| || Sbjct 878 TGATTCAT---TGACCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGA 822 Query 288293 TATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCT 288352 | |||||||| | || || | |||||| || | ||| || ||||||||||| || | | Sbjct 821 TGTTATAGTCTGAAAGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTT 762 Query 288353 GTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAAT 288412 |||| ||| || |||||||| |||| || || || || ||||| || |||| | Sbjct 761 GTTGGTCGGGTGGAATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGT 702 Query 288413 CGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 | | ||| || ||||| ||||| ||||| ||||| || ||||||||||| || |||| Sbjct 701 CTGATGGTTCAACGTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCA 642 Query 288473 T 288473 | Sbjct 641 T 641 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| || || | ||| || | || ||||| ||||| || || ||||| Sbjct 604 TTCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAA 545 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || |||| ||||||||| || || || || ||||| ||||||||||| Sbjct 544 AATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTT 485 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | |||| | || || || || ||||| ||||| ||||| || ||||| || Sbjct 484 TTCAATGGTATCGGATGGCTCAACATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAAC 425 Query 288462 GAATATCTGCAT 288473 ||| |||| ||| Sbjct 424 GAAGATCTACAT 413 Score = 104 bits (114), Expect = 6e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | ||| | || |||||| ||||| || ||||| | Sbjct 411 CCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 352 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||||| | ||||| |||||||| || | ||||||| |||| Sbjct 351 AGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGG 292 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || || || || ||||| |||| || | || || Sbjct 291 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACA 232 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || | || || ||||| || || | ||||| ||||| || | ||| || Sbjct 231 TCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACATGAT 182 >seq6367 Length=732 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | ||| ||||| || | ||||| || || Sbjct 436 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAA 495 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | |||||| | ||||| |||||||||||||| || || || || ||||| Sbjct 496 GATGAGTCTTTGTTGATCAGGGGGGATACCTTCTTTATCCTGAATCTTGGCCTTAACGTT 555 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | || || || || || || ||||| || |||| ||||||||| Sbjct 556 CTCGATGGTATCAGAGGGCTCGACATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGAC 615 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 616 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 646 >seq18912 Length=238 Score = 100 bits (110), Expect = 7e-16 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGG 288384 || || || |||||||| || | ||||||| ||||| || ||||| || |||||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGA---TCTGGAGGAATACCTTCCTTGTCCTGG 182 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || ||||| || || || || | || || ||||| ||||| ||||| Sbjct 181 ATCTTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTG 122 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||||||||| ||||||||| Sbjct 121 CCGGTCAGGGTCTTGACGAAGATCTGCATT 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179354531851520