Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq11890 132 6e-26 seq8500 82.4 9e-11 >seq11890 Length=3034 Score = 132 bits (146), Expect = 6e-26 Identities = 610/955 (64%), Gaps = 31/955 (3%) Strand=Plus/Plus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || || || | ||||||| || ||||| | |||||||||||| || ||| | Sbjct 1138 CATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTTTTGG 1197 Query 114345 CGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 114401 | ||| || ||||| |||| | ||| || | || || ||||| ||||| || Sbjct 1198 C---CTCATCGCAAGGATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACTT 1254 Query 114402 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 114461 || | || |||||| || || |||||||| || || || || | || Sbjct 1255 AGAAAGTTACTTTATGAAGTTTCTCATAATCAAA-----GACTCCATTTGTT-ATGTATC 1308 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521 |||| || | ||||| || ||||| ||||||| | ||||| | ||| || || | Sbjct 1309 TAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAA 1368 Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581 | || || ||| | ||| |||||||| || || || | |||||||| ||||| ||| Sbjct 1369 TGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTC 1428 Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT--GAG 114639 ||| ||| || ||||||||||| || || || ||||| ||| |||| | Sbjct 1429 CATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTT--AACTTTCAAT 1486 Query 114640 AATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC----CCCTCCTCC 114694 ||| | | ||| | || | || | | ||| | || || | || | Sbjct 1487 AATTGATTCCCAAAGTTTCATTGCCTTG-ATAGT--CTTT--CTTCCAATACCTTGGGAT 1541 Query 114695 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 114754 || || || || || | ||||||||||||||| || | || |||| ||| || Sbjct 1542 TCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCT 1601 Query 114755 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCT 114814 | || ||| ||||| |||| ||| | ||| || || | ||||||||| || ||| Sbjct 1602 TCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCT 1661 Query 114815 GGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 114874 || | ||||||||| |||| | ||| | | | |||||| | || || || Sbjct 1662 GGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTT 1721 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 | | | | ||||| | || ||| || ||||| || || | ||| | |||| ||| Sbjct 1722 CTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAA 1781 Query 114935 CCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 ||||| | | |||| | |||| ||||| || || || |||| || || | ||| Sbjct 1782 CCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGC 1841 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA-GACTTATTGGCTCT 115050 || |||| | |||| || || ||||| || ||| || | || | ||||||| Sbjct 1842 ATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCT-GTGGCTCT 1900 Query 115051 GACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 115110 || || || | | |||| || || || | ||| || || || | | | Sbjct 1901 GATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTTCTT 1960 Query 115111 GAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA 115170 ||| | | || || |||| || |||||| |||| | | |||||| ||||| Sbjct 1961 AAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCTACT 2020 Query 115171 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||| ||| |||| |||||||||||||| || || || || || || ||||| Sbjct 2021 CATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAAC 2075 >seq8500 Length=738 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 160691 CCAGTAGGTGTCTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGTGGTATC 160750 |||||||| ||| ||| | || ||||||||||||||||| ||||| |||| ||| Sbjct 449 CCAGTAGGAAACTATGGTAGAGTTGCACCAAGATCTGGTCTTGCTGTAAAGAACTTTATT 390 Query 160751 CAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGT 160800 | ||||| || |||||| | ||| | ||||| | ||| ||||| ||||| Sbjct 389 GATGTTGGAGCTGGTGTTATCGATGCTGACTATAGAGGAGAAGTTAAAGT 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597205456307200