Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5287 87.8 2e-12 seq55 84.2 2e-11 >seq5287 Length=1089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||||||||| | || || | | || || | |||||||| ||||| Sbjct 603 TCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAA 544 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||||| || || |||| ||| | | |||||||| | ||| |||| | ||| | | Sbjct 543 ATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGT-CTTGAATTTTAGCTTTCACGTT 485 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| | || ||||| | |||||||| ||||| || || ||||| || Sbjct 484 TTCAATGGTATCGGATGGCTCAACATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAAC 425 Query 42197 AAAGATTTGCAT 42208 ||||| | ||| Sbjct 424 GAAGATCTACAT 413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 ||| || |||||||||| | | | ||||| || | ||| ||||||| || || Sbjct 876 ATTCATTGACCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTA 817 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || || | ||||| | |||| || || |||||||| ||||| || |||| || ||| Sbjct 816 TAGTCTGAAAGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGG 757 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 |||| ||| | | || |||||| || || |||| || | | ||||| Sbjct 756 TCGGGTGGAATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGAT 697 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||| || |||| ||||| || || || || || ||||| || ||||||||||| Sbjct 696 GGTTCAACGTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 >seq55 Length=1219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | | |||||||| | || ||||||||| || ||||| ||| Sbjct 367 ACCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACT 308 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||| |||||||| ||||||| || || |||| ||| Sbjct 307 GAGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGG 248 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| ||| || |||| | | | ||||| | || || Sbjct 247 GATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAAC 188 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| |||||||| || || ||||| || ||||||||||| || Sbjct 187 GTCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543078083225600