Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6367 102 8e-17 seq5287 93.3 4e-14 seq55 87.8 2e-12 >seq6367 Length=732 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| ||||||||||| | | ||| | | ||||| | || | Sbjct 425 TGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCATCTTCCAACTAC 484 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | ||||| | || || || || || || |||||||| || || || || Sbjct 485 TTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGGATACCTTCTTTATCCTGAATCTTG 544 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | |||||| || || || || | ||| | ||||| || ||| Sbjct 545 GCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACATCAAGAGTAATAGTCTTACCCGTC 604 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || ||||| || | |||||| Sbjct 605 AAAGTCTTGACGAAGATCTACATTTT 630 >seq5287 Length=1089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| |||||||||| || ||| | | ||||| | ||||| ||| Sbjct 609 GTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCCAATTGCTTACCG 550 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| | || || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 549 GCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTA-GCTTT 491 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | ||||| | || || || | ||| | |||||||||||| | || Sbjct 490 CACGTTTTCAATGGTATCGGATGGCTCAACATCAAGAGTGATGGTCTTGCCGGTAAGGGT 431 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || | ||| Sbjct 430 CTTAACGAAGATCTACAT 413 >seq55 Length=1219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 |||||| |||| ||| | || || || |||||||||||||| || || ||| | | Sbjct 583 TCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCC 524 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||||| ||||| || ||| | || || | || || ||||| || |||||||| || Sbjct 523 ATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTT 464 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| ||| ||| | || || | || || || | ||| | Sbjct 463 GTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGAT 404 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || || | || || ||||| || | ||| Sbjct 403 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499520888089600