Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq11890 161 1e-34 >seq11890 Length=3034 Score = 161 bits (178), Expect = 1e-34 Identities = 490/749 (65%), Gaps = 6/749 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||| || || |||||||| || ||||| ||| | ||| | |||||||| Sbjct 2065 GCAACCCCTACTCTTTTCAACGCTGGTACCCCAAAACCATAAATGAGTAGCTGTTTCCTT 2006 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | || |||| ||||| || |||||| | || | || ||| || ||| Sbjct 2005 TTAATGATGAAGGATGACTCTATTCACGGAATATATGATACTCTTAAGAACGTTGCTTTG 1946 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || || || ||| | || | ||| ||| | | | |||| ||| Sbjct 1945 ATTTCTAAGAGTGCTGGTGGAGTTGGACTTGCTGTTCACAATATCAGAGCCACAGGTAGT 1886 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| || || ||||| ||| || || || || || |||||| | || ||||| Sbjct 1885 TACATCAAGGGAACTAATGGACACTCAAATGGACTTGTTCCCATGCTCAGAGTTTTCAAT 1826 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || | || || ||||| |||||||| | ||| |||||||| ||||| |||| Sbjct 1825 GAAACTGCTAGATATGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCTAC 1766 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| ||||| || || || | ||| | | || |||||||||| || || Sbjct 1765 TTAGAGCCATGGCATGCTGATGTCTTTGACTTCCTTCAACTCAGAAAGAACCATGGAAAA 1706 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | || || ||||| | |||| ||||||||||| ||||| ||||| ||||| Sbjct 1705 GAAGAATAAAGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGATCTTTTCATGAAG 1646 Query 94312 CGCGT-CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | || ||| | ||| | |||| |||||| ||||| |||||| || || | Sbjct 1645 AGGGTAAGAG-ACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGCCAAAGGCCTCTA 1587 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || ||| ||| ||||||| ||| ||| || || ||||| || || | | Sbjct 1586 TGAAGTTCACGGAGAAGAGTTTGAAGCCTTATATACTAAATATGAATCCCAAGGTATTGG 1527 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGG-ATCAGATCGTGGACGTACAGGTGGAGA 94489 || ||| ||| | || | ||| || |||| |||| | || | || | | |||| Sbjct 1526 AAGAAAGACTATCAAGGCAATGAAACTTTGGGAATCAATTATTGAAAGT-TAAATTGAGA 1468 Query 94490 CGGGTACGCCCTACAT-CTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | ||||| |||||||| ||| | ||| | | | || | || || ||||| || | Sbjct 1467 CAGGTACTCCCTACATGCTTTATAAAGATCAC-GCTAATGGAAAATCAAACCAAAAGAAT 1409 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||| || ||||| || ||||| | || ||||||||||| || Sbjct 1408 CTTGGAACAATAAAGAGTTCTAATCTATGTTGTGAGATCATTGAATATACTTCTCCAGAT 1349 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 || ||||||||||| || || | ||| || Sbjct 1348 GAAATTGCTGTGTGCAATCTTGCCTCAAT 1320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494600508646400