Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq55 107 1e-18 seq5287 100 2e-16 >seq55 Length=1219 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | ||| || |||||||| || || ||||| ||||| || || Sbjct 1050 CCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAA 991 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || || | ||| || |||||| | || | | ||||| ||| ||| Sbjct 990 AGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 931 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| | || ||| || || |||| |||||||| || || Sbjct 930 ATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACA 871 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| ||||| || || || || || || |||||||| Sbjct 870 TCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | || ||||| || || || || ||||| |||||||| || ||| Sbjct 366 CCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTG 307 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||| || | ||| || |||||| | || | | ||||| ||| ||| Sbjct 306 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGG 247 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || ||| || ||| |||| || || || || ||| Sbjct 246 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACG 187 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || ||||| || || || || || || || ||||||||||||| Sbjct 186 TCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATTTG 135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | |||||||| || || || || ||||| |||||||| |||||| Sbjct 594 CCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTG 535 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| || ||||| | || | | ||||| ||| ||| Sbjct 534 AGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 475 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| || || ||| | || || || || || ||| Sbjct 474 ATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACG 415 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || || || || || || || || | |||| Sbjct 414 TCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACATA 367 >seq5287 Length=1089 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 411 CCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 352 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||||||||| | || |||||| | || | | |||||| ||| ||| Sbjct 351 AGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGG 292 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| || ||| |||| ||||| || || || Sbjct 291 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACA 232 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 ||||||||||| || || || || | || ||||| || |||| ||| |||| Sbjct 231 TCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACATGATTGA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357305582614400