Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq55 105 6e-18 seq5287 100 3e-16 seq6367 89.7 5e-13 seq18108 87.8 2e-12 >seq55 Length=1219 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| ||||| || || | |||| | || || | |||| Sbjct 798 TGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTCGAGTTGT 739 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | || ||| || || || ||||| ||||| |||||||| || || Sbjct 738 TTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTGGATCTTA 679 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| |||| |||||| ||||| || | || || ||||| Sbjct 678 GCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTTACCGGTA 619 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||| ||| Sbjct 618 AGGGTCTTGACGAAGATTTACAT 596 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | ||| || ||||| ||||||||||| || || || Sbjct 369 ATACCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCA 310 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| |||| | || || | ||| ||||| ||| | || | || ||| || || || Sbjct 309 CTGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGT 250 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| ||| | |||||| || | ||| Sbjct 249 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCA 190 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | |||||||| || || || || || || |||||||| Sbjct 189 ACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 140 >seq5287 Length=1089 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || || ||||||||||| ||||| ||||| Sbjct 642 ATACCTCCTCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCT 583 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || ||| |||||||| || || ||| | || | || | || || || Sbjct 582 GAGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGT 523 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||||||||| ||| | ||| | ||| ||||| | ||| Sbjct 522 GGGATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCA 463 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| || || || || || || | ||| Sbjct 462 ACATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 >seq6367 Length=732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || ||||| || | || || |||||||| |||||||| || ||||| Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | ||| ||||| | ||||| || | || | || ||| || || || || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||||||||| |||| | || | | | || | || | ||| || || | |||||| Sbjct 521 ATACCTTCTTTATCCTGAA-TCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| || || || || | ||| || || || || | ||| Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACAT 627 >seq18108 Length=1037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-G 45170 ||||||| | || || | |||| ||| | |||||||| |||| ||| ||||| || | Sbjct 863 TTCCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAG 804 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || || || | ||||| || || |||| | || || || | Sbjct 803 ATAACG-TTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGAT 745 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| | ||||| ||| | | | || || | ||| Sbjct 744 GGAATACCTTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCC 685 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| | || || ||||||| ||| | ||||| |||||||| Sbjct 684 ACGGCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451891103206400