Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11890 127 3e-24 seq15602 100 3e-16 seq8500 82.4 9e-11 >seq11890 Length=3034 Score = 127 bits (140), Expect = 3e-24 Identities = 609/955 (64%), Gaps = 31/955 (3%) Strand=Plus/Plus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || || || | ||||||| || ||||| | |||||||||||| || ||| Sbjct 1138 CATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTT---T 1194 Query 116306 CGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 || ||| || ||||| |||| | ||| || | || || ||||| ||||| || Sbjct 1195 TGGCCTCATCGCAAGGATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACTT 1254 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422 || | || |||||| || || |||||||| || || || || | || Sbjct 1255 AGAAAGTTACTTTATGAAGTTTCTCATAATCAAA-----GACTCCATTTGTT-ATGTATC 1308 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 |||| || | ||||| || ||||| ||||||| | ||||| | ||| || || | Sbjct 1309 TAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAA 1368 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 | || || ||| | ||| |||||||| || || || | |||||||| ||||| ||| Sbjct 1369 TGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTC 1428 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT--GAG 116600 ||| ||| || || ||||| || || || || ||||| ||| |||| | Sbjct 1429 CATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTT--AACTTTCAAT 1486 Query 116601 AATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC----CCCTCCTCC 116655 ||| | | ||| | || | || | | ||| | || || | || | Sbjct 1487 AATTGATTCCCAAAGTTTCATTGCCTTG-ATAGT--CTTT--CTTCCAATACCTTGGGAT 1541 Query 116656 TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCC 116715 || || || || || | ||| ||||||||||| || | | || |||| ||| || Sbjct 1542 TCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCT 1601 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | || ||||||||| |||| ||| | ||| || |||| ||||||||| || ||| Sbjct 1602 TCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCT 1661 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 || | |||||| || |||| | ||| | | | |||||| | || || || Sbjct 1662 GGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTT 1721 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 | | | | ||||| | || ||| || ||||| || || | ||| | |||| ||| Sbjct 1722 CTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAA 1781 Query 116896 CCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 ||||| | | |||| | |||| ||||| || || ||| | || || || | ||| Sbjct 1782 CCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGC 1841 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA-GACTTGTTGGCTCT 117011 || |||| | |||| || || ||||| || ||| || | || || ||||||| Sbjct 1842 ATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCTG-TGGCTCT 1900 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || || ||| | | |||| || || || | ||| || || || | | | Sbjct 1901 GATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTTCTT 1960 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 ||| | | || || || | || |||||| |||| | | ||||| ||||| Sbjct 1961 AAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCTACT 2020 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| ||| |||| |||||||||||||| || || || || || || ||||| Sbjct 2021 CATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAAC 2075 >seq15602 Length=1555 Score = 100 bits (110), Expect = 3e-16 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| ||||| | || || | |||||| ||||| ||||||||||| ||||| Sbjct 1041 GTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACC 982 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||||||||| | || || |||||||| ||||| || ||||| ||| Sbjct 981 ACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGC 922 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGG 127684 ||||| || | || | |||||| || |||||| Sbjct 921 TGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGG 887 >seq8500 Length=738 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 163353 CCAGTAGGTGTGTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATC 163412 |||||||| || ||| | || ||||||||||||||||| ||||| |||| | ||| Sbjct 449 CCAGTAGGAAACTATGGTAGAGTTGCACCAAGATCTGGTCTTGCTGTAAAGAACTTTATT 390 Query 163413 CAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGT 163462 | ||||| || |||||| | ||| | ||||| | ||| ||||| ||||| Sbjct 389 GATGTTGGAGCTGGTGTTATCGATGCTGACTATAGAGGAGAAGTTAAAGT 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613355050214400