Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6367 140 8e-28 seq55 113 1e-19 seq5287 93.3 1e-13 >seq6367 Length=732 Score = 140 bits (154), Expect = 8e-28 Identities = 168/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| ||| | ||| ||||| || || ||||||| |||||| |||| ||| || Sbjct 406 TCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGT 465 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||||| || ||||||||| |||||||| | || || || || || || Sbjct 466 TCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGGATACC 525 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||||||||| ||| ||| |||| ||| || | | || ||||| | Sbjct 526 TTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACATCAAG 585 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||||||||| | ||| || || || || |||||||| Sbjct 586 AGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGAT---CTACATTTT 630 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| ||||||||| |||||||||||||||| || ||| | ||||||||| Sbjct 506 AAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAACA 447 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 |||| ||||| || ||||||||| | || ||||||||| || Sbjct 446 TCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGA 406 >seq55 Length=1219 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | |||||||| ||||||||||| | ||||||||| | || || Sbjct 585 AGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTG 526 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || |||||||| || ||||| || | || || || || |||||||| Sbjct 525 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 466 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||| || |||| |||||||| || || || || | ||| Sbjct 465 TTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTG 406 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || ||||| || ||||| || || || || || Sbjct 405 ATGGTCTTTCCAGTGAGGGTCTTGACGAAGAT 374 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | ||| || || ||||||||||||| ||| ||||| | | ||| ||| Sbjct 1041 AGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTT 982 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || || ||||| || |||||||| || | || || || || |||||||| Sbjct 981 CCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 922 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||| ||||| ||| ||| ||| | || |||| || || ||||| | || Sbjct 921 TTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTA 862 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || || || ||||| Sbjct 861 ATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTG 827 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | |||||||| ||||||||||||| |||||||||| | || || Sbjct 357 AGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTG 298 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || || |||||||| ||||| ||||| | || || || || || |||||| Sbjct 297 CCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 238 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| ||| || ||| | |||||| | | || || ||||| ||| Sbjct 237 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTG 178 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || ||||| Sbjct 177 ATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTG 143 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| || || | |||||| || ||||||||||||| ||| |||||| | || Sbjct 817 TCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGT 758 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||| || || ||||| ||||| ||||| | || || || ||| ||| || Sbjct 757 TCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACC 698 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| ||| ||| | ||||| | | || ||||| | Sbjct 697 TTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAG 638 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 ||||| |||||||| || || || || || || |||| Sbjct 637 GGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGATTT 600 >seq5287 Length=1089 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | |||||||| || || || |||| ||||||||||| | || || Sbjct 402 AGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGTTCTG 343 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| | || |||||| |||||||| || | ||| || || || || ||||| Sbjct 342 CCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCC 283 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| ||| || ||| | ||||| | || || ||||| || || Sbjct 282 TTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACATCTAAGGTA 223 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || || | || || || || |||| Sbjct 222 ATAGTCTTTCCAGTTAATGTCTTTACGAAGATTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178621918129280